Os01g0935400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os01g0935400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.52 | 0.555 | 11.2 | 0.336 | 2.01 | 1.21 | -0.513 | -4.63 | -0.353 | 11.6 | 23.74 | 40 | -- | -- |
| 148.75 | 0.572 | 11.1 | 1.01 | 2.04 | 0.831 | -1.15 | -- | -0.156 | 11.8 | 23.74 | 40 | -- | -- |
| 140.47 | 0.552 | 11.2 | 0.235 | 2.01 | 1.24 | -- | -5.04 | -0.39 | 11.6 | 23.54 | 39 | -- | -- |
| 154.42 | 0.583 | 11.1 | 0.97 | 2.05 | 0.798 | -- | -- | -0.152 | 11.8 | 23.93 | 21 | -- | -- |
| 336.58 | 0.859 | 11.3 | -0.264 | -- | 2.74 | -- | -6.7 | -0.651 | -- | 23.54 | 39 | -- | -- |
| 159.77 | 0.593 | 11.1 | 1.14 | 2.29 | -- | -1.04 | -- | -0.0478 | 12.2 | -- | -- | -- | -- |
| 164.43 | 0.6 | 11.1 | 1.1 | 2.29 | -- | -- | -- | -0.0528 | 12.1 | -- | -- | -- | -- |
| 359.3 | 0.887 | 11.2 | 0.577 | -- | 2.42 | -- | -- | -0.466 | -- | 20.76 | 9 | -- | -- |
| 177.38 | 0.624 | 11.2 | -- | 1.97 | 1.06 | -- | -- | -0.316 | 11.6 | 22.61 | 18 | -- | -- |
| 494.42 | 1.04 | 11.2 | 1.03 | -- | -- | -- | -- | -0.0865 | -- | -- | -- | -- | -- |
| 196.47 | 0.656 | 11.1 | -- | 2.27 | -- | -- | -- | -0.176 | 12.1 | -- | -- | -- | -- |
| 367.09 | 0.892 | 11.3 | -- | -- | 2.61 | -- | -- | -0.568 | -- | 18.9 | 2 | -- | -- |
| 522.35 | 1.07 | 11.2 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.88 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 8 | 137.68 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 14 | 137.90 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 21 |
| 24 | 138.06 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 14 |
| 30 | 138.13 | temperature | 20.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 130 | 138.98 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 138 | 139.09 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 156 | 139.23 | temperature | 25.0 | 90 | > th | dose independent | rect. | 6 | 12 |
| 166 | 139.31 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 14 |
| 170 | 139.32 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 187 | 139.41 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 287 | 139.92 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 289 | 139.94 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 356 | 140.30 | temperature | 25.0 | 270 | < th | dose independent | sin | 1 | NA |
| 363 | 140.32 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 364 | 140.33 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 365 | 140.33 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 377 | 140.39 | temperature | 25.0 | 30 | > th | dose dependent | no | NA | NA |
| 390 | 140.43 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 391 | 140.44 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 449 | 140.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 468 | 140.59 | temperature | 25.0 | 90 | > th | dose independent | sin | 0 | NA |
| 478 | 140.61 | wind | 5.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 481 | 140.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 483 | 140.61 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 484 | 140.61 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 487 | 140.61 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 488 | 140.61 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 490 | 140.61 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 495 | 140.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 496 | 140.61 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 506 | 140.63 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 511 | 140.64 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 514 | 140.64 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 515 | 140.65 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 524 | 140.67 | wind | 9.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 545 | 140.73 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 547 | 140.74 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 559 | 140.78 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 564 | 140.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 573 | 140.81 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 576 | 140.82 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 617 | 140.97 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 621 | 140.98 | humidity | 80.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 623 | 140.98 | temperature | 30.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 647 | 141.08 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 649 | 141.10 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 650 | 141.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 653 | 141.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 657 | 141.10 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 667 | 141.10 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 668 | 141.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 689 | 141.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 692 | 141.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 756 | 141.33 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 776 | 141.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 787 | 141.45 | humidity | 80.0 | 30 | > th | dose independent | rect. | 8 | 15 |
| 797 | 141.48 | humidity | 70.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 808 | 141.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 900 | 141.78 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 948 | 141.97 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 14 |