Os04g0522500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os04g0522500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 910.17 | 1.42 | 10.5 | -4.11 | 3.06 | -5.38 | 1.89 | -10.2 | -2.56 | 13.9 | 69.81 | 1341 | 11.3 | 0.7 |
| 1068.92 | 1.52 | 10.6 | -4.66 | 2.9 | -4.86 | 2.39 | -- | -2.45 | 14.5 | 67.41 | 1048 | 11.3 | 2.17 |
| 920.71 | 1.41 | 10.5 | -4.04 | 3.08 | -5.49 | -- | -10.4 | -2.55 | 14 | 70.02 | 1332 | 11.4 | 0.715 |
| 1077.38 | 1.53 | 10.6 | -4.49 | 2.89 | -4.71 | -- | -- | -2.3 | 14.6 | 65.56 | 1045 | 11.3 | 2.28 |
| 1434.44 | 1.76 | 10.5 | -4.3 | -- | -6.09 | -- | -9.93 | -2.47 | -- | 69.53 | 1273 | 11.4 | 1.3 |
| 1444.1 | 1.78 | 10.5 | -4.05 | 3.03 | -- | 1.88 | -- | -2.06 | 13.8 | -- | -- | -- | -- |
| 1457.92 | 1.79 | 10.5 | -3.99 | 3.03 | -- | -- | -- | -2.05 | 13.8 | -- | -- | -- | -- |
| 1511.19 | 1.81 | 10.5 | -4.76 | -- | -4.48 | -- | -- | -2.07 | -- | 55.52 | 1076 | 11.6 | 2.9 |
| 1607.36 | 1.87 | 10.5 | -- | 2.97 | -4.04 | -- | -- | -1.91 | 14.7 | 65.06 | 984 | 11.4 | 2.65 |
| 2015.84 | 2.1 | 10.5 | -4.11 | -- | -- | -- | -- | -2.12 | -- | -- | -- | -- | -- |
| 1877 | 2.03 | 10.4 | -- | 3.11 | -- | -- | -- | -1.61 | 13.8 | -- | -- | -- | -- |
| 1581.52 | 1.85 | 10.4 | -- | -- | -5.88 | -- | -- | -1.7 | -- | 64.87 | 602 | 15.2 | 7.58 |
| 2461.82 | 2.32 | 10.4 | -- | -- | -- | -- | -- | -1.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 962.73 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 985.34 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 10 | 1005.25 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 21 | 1013.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 30 | 1019.68 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 32 | 1021.07 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 36 | 1021.65 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 38 | 1023.35 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 68 | 1030.27 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 74 | 1031.07 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 13 |
| 90 | 1034.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 91 | 1034.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 100 | 1036.08 | humidity | 60.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 111 | 1037.03 | humidity | 70.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 127 | 1039.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 129 | 1039.72 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 131 | 1040.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 134 | 1040.47 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 143 | 1042.36 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 158 | 1043.88 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 165 | 1044.48 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 183 | 1045.94 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 192 | 1046.63 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 18 |
| 209 | 1048.44 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 220 | 1049.52 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 246 | 1051.40 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 260 | 1052.24 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 276 | 1053.16 | humidity | 70.0 | 720 | > th | dose independent | sin | 21 | NA |
| 284 | 1053.50 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 309 | 1054.64 | humidity | 80.0 | 720 | < th | dose independent | sin | 23 | NA |
| 328 | 1055.36 | humidity | 70.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 337 | 1056.25 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 356 | 1057.49 | humidity | 90.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 357 | 1057.51 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 364 | 1057.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 385 | 1058.84 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 386 | 1058.90 | humidity | 80.0 | 720 | < th | dose independent | rect. | 6 | 14 |
| 387 | 1058.90 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 399 | 1059.62 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 412 | 1060.00 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 440 | 1060.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 459 | 1061.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 460 | 1061.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 519 | 1063.45 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 4 | NA |
| 522 | 1063.48 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 594 | 1065.67 | humidity | 70.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 631 | 1066.72 | humidity | 90.0 | 720 | < th | dose dependent | no | NA | NA |
| 737 | 1068.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 765 | 1069.68 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 787 | 1070.23 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 804 | 1070.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 808 | 1070.81 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 841 | 1071.89 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 854 | 1072.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 855 | 1072.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 864 | 1072.32 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 880 | 1072.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 889 | 1072.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 891 | 1072.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 895 | 1072.89 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 909 | 1073.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 918 | 1073.32 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 940 | 1073.88 | humidity | 70.0 | 720 | < th | dose independent | rect. | 12 | 22 |
| 952 | 1074.11 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 984 | 1074.90 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 994 | 1075.16 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 999 | 1075.20 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |