BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0127400 Os05g0127400|AK069823
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0127400 Similar to DnaJ homolog subfamily B member 1 (... 477 e-135
Os05g0562300 Similar to DnaJ-like protein 263 9e-71
Os02g0306900 Similar to DnaJ-like protein 247 8e-66
Os01g0239100 Heat shock protein DnaJ family protein 223 2e-58
Os08g0374400 Similar to DnaJ-like protein 188 6e-48
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 179 2e-45
Os01g0875700 Heat shock protein DnaJ family protein 160 9e-40
Os07g0513600 HSP40/DnaJ peptide-binding domain containing p... 117 1e-26
Os03g0787300 Similar to DnaJ homolog 115 4e-26
Os03g0648400 Similar to DnaJ protein homolog (DNAJ-1) 111 8e-25
Os12g0619100 101 6e-22
Os04g0549600 Heat shock protein DnaJ family protein 98 7e-21
Os02g0656500 DnaJ-like protein 98 7e-21
Os05g0156500 Similar to Apobec-1 binding protein 2 96 5e-20
AK108884 79 5e-15
Os05g0334400 Heat shock protein DnaJ family protein 68 1e-11
>Os05g0127400 Similar to DnaJ homolog subfamily B member 1 (Heat shock 40 kDa
protein 1) (Heat shock protein 40) (HSP40) (DnaJ protein
homolog 1) (HDJ-1)
Length = 331
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/331 (75%), Positives = 251/331 (75%)
Query: 1 KPSHRGRKQPTITLFFFYPSXXXXXXXXXXXXIDRSPAASDGAGLLQXXXXXXXXXXXXX 60
KPSHRGRKQPTITLFFFYPS IDRSPAASDGAGLLQ
Sbjct: 1 KPSHRGRKQPTITLFFFYPSRRRRRRRRRRRRIDRSPAASDGAGLLQGARRGPRRHRRGA 60
Query: 61 QEILPPPRDKNRSPHADDSLFKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEIFSEMXX 120
QEILPPPRDKNRSPHADDSLFKQ EEIFSEM
Sbjct: 61 QEILPPPRDKNRSPHADDSLFKQAGAAPPPTTSSSSSHGGGGGFRFSPRSAEEIFSEMFG 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXETSATKAPAIERQLACSLEDLYRGATKKMKISRDV 180
ETSATKAPAIERQLACSLEDLYRGATKKMKISRDV
Sbjct: 121 GAFGGAGPRAPGAGFPGFGGSPRAGETSATKAPAIERQLACSLEDLYRGATKKMKISRDV 180
Query: 181 LDATGKPTNLEEILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRD 240
LDATGKPTNLEEILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRD
Sbjct: 181 LDATGKPTNLEEILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRD 240
Query: 241 KDDLIYTHRISLVEALTGCTVQLTTLDGRNLTVPVKSVINPTSEEVVKGEGMPITKEPSK 300
KDDLIYTHRISLVEALTGCTVQLTTLDGRNLTVPVKSVINPTSEEVVKGEGMPITKEPSK
Sbjct: 241 KDDLIYTHRISLVEALTGCTVQLTTLDGRNLTVPVKSVINPTSEEVVKGEGMPITKEPSK 300
Query: 301 KGDLKIRFQIKFPTNLTSDQKSGIQQLLPKP 331
KGDLKIRFQIKFPTNLTSDQKSGIQQLLPKP
Sbjct: 301 KGDLKIRFQIKFPTNLTSDQKSGIQQLLPKP 331
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 154/178 (86%)
Query: 151 KAPAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVTF 210
KAPAIER+L CSLE+LY+G TKKMKISR++ DA+GK +EEILTID+KPGWKKGTK+TF
Sbjct: 183 KAPAIERKLPCSLEELYKGTTKKMKISREIADASGKTIPVEEILTIDVKPGWKKGTKITF 242
Query: 211 PKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRN 270
P+KGNE+PN+IP+DLVFII+E+ H F RD +DL+ T +I L EALTG TV LTTLDGR+
Sbjct: 243 PEKGNEQPNVIPADLVFIIDEKPHPVFTRDGNDLVVTQKIPLAEALTGHTVHLTTLDGRS 302
Query: 271 LTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
LT+P+ SVINP EEVV+GEGMPI K+PSKKG+L+++F IKFP LT+DQKSG+++LL
Sbjct: 303 LTIPITSVINPGYEEVVRGEGMPIPKDPSKKGNLRVKFDIKFPARLTADQKSGVKRLL 360
>Os02g0306900 Similar to DnaJ-like protein
Length = 349
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/178 (64%), Positives = 149/178 (83%)
Query: 151 KAPAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVTF 210
KA IE +L C+L DLY+G TKKMKISR++LD++G+ +EEILTIDIKPGWKKGTK+TF
Sbjct: 170 KAAPIENRLPCNLADLYKGTTKKMKISREILDSSGRTMVVEEILTIDIKPGWKKGTKITF 229
Query: 211 PKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRN 270
P+KGNE P++IP+D+VF+I+E+ H F R+ +DL+ T +ISL EALTGCTVQ+T LDGRN
Sbjct: 230 PEKGNESPHVIPADIVFVIDEKPHDLFTREGNDLVMTQKISLAEALTGCTVQVTALDGRN 289
Query: 271 LTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
LTVP+ +V+ P EEVV EGMPI K+PSKKG+L+I+F IKFP+ LTS+QKS I++LL
Sbjct: 290 LTVPINNVVYPGYEEVVLREGMPIPKDPSKKGNLRIKFNIKFPSRLTSEQKSEIKRLL 347
>Os01g0239100 Heat shock protein DnaJ family protein
Length = 349
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 140/179 (78%)
Query: 150 TKAPAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVT 209
K P IE +L SL DLY+G TKKMKISR+++D G+ + EEIL I++KPGWK+GTK+T
Sbjct: 169 AKPPPIENRLPVSLADLYKGVTKKMKISREIIDFNGRVSQQEEILQIEVKPGWKRGTKIT 228
Query: 210 FPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGR 269
F +KGN+ PN+ P+D+VFIIEE+ H F R+ +DL+ T +ISLVEALTG T ++ TLD R
Sbjct: 229 FEEKGNQAPNMKPADIVFIIEEKPHDIFTREGNDLVITEKISLVEALTGYTARIITLDAR 288
Query: 270 NLTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
+L+VP+ SVI+P EVV GEGMP K P+KKGDLKI+F I+FP+ LTSDQK+G ++LL
Sbjct: 289 SLSVPINSVIHPDYVEVVPGEGMPNPKGPNKKGDLKIKFNIRFPSRLTSDQKAGFKRLL 347
>Os08g0374400 Similar to DnaJ-like protein
Length = 344
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 128/191 (67%), Gaps = 15/191 (7%)
Query: 153 PAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVTFPK 212
P +E +LAC+LE+LY G TK MKISR+V+DA+G+ EIL+I++KPGWKKGTK+TFP
Sbjct: 150 PPVESKLACTLEELYVGVTKNMKISRNVVDASGRMKTESEILSIEVKPGWKKGTKITFPG 209
Query: 213 KGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRNLT 272
KGN++ + +P+DLVF+++E+ H ++RD +DL+ R++L +AL G V L TLDGR L
Sbjct: 210 KGNQQWSQLPADLVFVVDEKPHDVYRRDGNDLVAEARVTLADALGGTVVVLATLDGRELL 269
Query: 273 VPVKS---------------VINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLT 317
V V V+ P E VV EGMPI +EP + G L+IRF + FP LT
Sbjct: 270 VEVSGGGVAAGDEDDDDEDPVVYPGYELVVPSEGMPIAREPGRHGSLRIRFDVAFPERLT 329
Query: 318 SDQKSGIQQLL 328
Q++ I+++L
Sbjct: 330 RRQRAQIKRIL 340
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 122/178 (68%)
Query: 151 KAPAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVTF 210
K PAIE+ L C+LE+LY G +KMKI+R+V + GK E+L +++ PGWKKGTK+TF
Sbjct: 160 KPPAIEKTLLCTLEELYNGTKRKMKITRNVANTDGKVEIETEVLPVEVLPGWKKGTKITF 219
Query: 211 PKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRN 270
P KG+ +P DL F+I+ + H + + ++L+ T I LV+AL G T+ L TLDGRN
Sbjct: 220 PNKGDRLSGQLPQDLTFVIDLKPHDVYLLEGNNLVATQVIPLVDALAGTTIHLKTLDGRN 279
Query: 271 LTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
L + V+ V+ P E V+ EG PI KEP KKG+LKI+F + FPT L+S Q++ I+Q++
Sbjct: 280 LPIRVEEVVRPGHEIVLANEGWPIRKEPGKKGNLKIKFDVTFPTRLSSSQRAAIRQIM 337
>Os01g0875700 Heat shock protein DnaJ family protein
Length = 327
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 1/179 (0%)
Query: 151 KAPAIERQLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEILTIDIKPGWKKGTKVTF 210
KAP +ER+L C+LE+L G K++K +RDV+ G E + +KPGWKKG K+TF
Sbjct: 143 KAPPLERKLDCTLEELCHGCKKEVKFTRDVVTKNGSIVKKEVSQMVLVKPGWKKGNKITF 202
Query: 211 PKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRN 270
G+E+P +P+D VF+I E+ H FKR +DL+ + LV ALTG + L G+
Sbjct: 203 EGMGDERPGCLPADAVFVISEKKHPVFKRVGNDLVLKAEVPLVSALTGWSFSFRLLSGKK 262
Query: 271 LTVPVK-SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
++ + +I P E+++KGEGMPI + +GDL+++F+I FP LT +Q+ G+ Q+L
Sbjct: 263 VSCSFQDEIICPGYEKIIKGEGMPIADQKGARGDLRVKFEIAFPKQLTDEQRDGLAQIL 321
>Os07g0513600 HSP40/DnaJ peptide-binding domain containing protein
Length = 526
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Query: 158 QLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEI-LTIDIKPGWKKGTKVTFPKKGNE 216
+L C+LE+LY+G + + R + T +P EEI L + + PG +KGTK+T P +G+
Sbjct: 355 ELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSH 414
Query: 217 KPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRNLTVPVK 276
P DL+ ++ H + +DL+ + LV+AL CT+ L TLDGR L + V
Sbjct: 415 FYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVD 474
Query: 277 SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLL 328
V+ P E V+K EG PI + KG+L+I F + FP L+ Q+ I+Q+L
Sbjct: 475 EVVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVL 524
>Os03g0787300 Similar to DnaJ homolog
Length = 417
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 193 ILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+L + ++ G + G K+TFP + +E P+ + D++F+++++ H +FKR DDL Y H ++L
Sbjct: 219 VLEVVVEKGMQNGQKITFPGEADEAPDTVTGDIIFVLQQKEHPKFKRKGDDLFYEHTLNL 278
Query: 253 VEALTGCTVQLTTLDGRNLTVPVK--SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQI 310
EAL G LT LD R L + K V+ P S + V EGMP+ + P KG L I F +
Sbjct: 279 TEALCGFQFVLTHLDNRQLLIKSKPGEVVKPDSFKAVNDEGMPMYQRPFMKGKLYIHFSV 338
Query: 311 KFPTNLTSDQKSGIQQLLP 329
+FP +L DQ ++ +LP
Sbjct: 339 EFPDSLNPDQCKALETVLP 357
>Os03g0648400 Similar to DnaJ protein homolog (DNAJ-1)
Length = 417
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 193 ILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+L + ++ G + K+TFP + +E P+ + D+VF+++++ H++FKR DDL Y H +SL
Sbjct: 220 VLEVHVEKGMQHNQKITFPGEADEAPDTVTGDIVFVLQQKDHSKFKRKGDDLFYEHTLSL 279
Query: 253 VEALTGCTVQLTTLDGRNLTVPVK--SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQI 310
EAL G LT LD R L + V+ P + + EGMP+ + P KG L I F +
Sbjct: 280 TEALCGFQFVLTHLDNRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFTV 339
Query: 311 KFPTNLTSDQKSGIQQLLP 329
+FP +L +Q ++ +LP
Sbjct: 340 EFPDSLAPEQCKALEAVLP 358
>Os12g0619100
Length = 467
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 193 ILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+L + ++ G G ++TFP + + K N + DLV + ++ H +F R DDL+Y H +SL
Sbjct: 258 VLELAVEKGVPDGHRITFPGEADVKENGVAGDLVMGLRQKKHGKFTRKGDDLVYEHELSL 317
Query: 253 VEALTGCTVQLTTLDGRNLTV--PVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQI 310
EAL G +T LDGR L V VI P + + GEGMP+ P KG L + F++
Sbjct: 318 AEALCGFQFVITHLDGRRLLVTSGAGEVIRPGQLKAIDGEGMPVHGMPFAKGTLYVAFRV 377
Query: 311 KFPTNLT 317
FP +T
Sbjct: 378 AFPGTMT 384
>Os04g0549600 Heat shock protein DnaJ family protein
Length = 416
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 155 IERQLACSLEDLYRGATKKMKISRDVLDATGKPTNL--------EEILTIDIKPGWKKGT 206
I RQ+ + + + + S +++ K TN +++L + I+ G + G
Sbjct: 173 IMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQ 232
Query: 207 KVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTL 266
K+ F + +E P+ + D+VFI++ + H RFKR DDL ISL EAL G LT L
Sbjct: 233 KIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHL 292
Query: 267 DGRNLTVPVK--SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTN--LTSDQKS 322
D R L + +I P + + EGMP P KG L + F ++FP + L+ DQ
Sbjct: 293 DSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCR 352
Query: 323 GIQQLLP 329
++ +LP
Sbjct: 353 ALEMILP 359
>Os02g0656500 DnaJ-like protein
Length = 420
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Query: 193 ILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+L + ++ G + G K+ F + +E P+ + D+VF+++ + H +FKR DDL H ISL
Sbjct: 220 VLEVHVEKGMQHGQKIVFQGEADEAPDTVTGDIVFVLQLKDHPKFKRKFDDLFTEHTISL 279
Query: 253 VEALTGCTVQLTTLDGRNLTVPVK--SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQI 310
EAL G LT LDGR L + VI P + + EGMP P KG L + F +
Sbjct: 280 TEALCGFQFVLTHLDGRQLLIKSNPGEVIKPGQHKAINDEGMPQHGRPFMKGRLFVEFNV 339
Query: 311 KF--PTNLTSDQKSGIQQLLP 329
+F P LT Q ++++LP
Sbjct: 340 EFPEPGALTPGQCRSLEKILP 360
>Os05g0156500 Similar to Apobec-1 binding protein 2
Length = 146
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Query: 192 EILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRIS 251
+ LT+DI+ G + G +V+F ++G K + P DL F I H RF+R+ +DL T IS
Sbjct: 10 DFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLKFRIRTAPHERFRREGNDLHTTVTIS 69
Query: 252 LVEALTGCTVQLTTLDGRNLTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIK 311
L++AL G + LD + + K + P KGEGMP+ + +KKGDL + F++
Sbjct: 70 LLQALVGFEKTIKHLDNHMVEIGTKGITKPKEVRKFKGEGMPLY-QSNKKGDLYVTFEVL 128
Query: 312 FPTNLTSDQKSGIQQLL 328
FP LT DQKS ++ +L
Sbjct: 129 FPKTLTDDQKSKLKSIL 145
>AK108884
Length = 424
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 9/147 (6%)
Query: 193 ILTIDIKPGWKKGTKVTFPKKGNEKPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+L + I G ++G ++ + ++ P+ P D++F ++E H F+R DL +ISL
Sbjct: 226 VLELYIPRGAREGERIVLAGEADQLPDQEPGDIIFTLKETEHETFERAGADLRAELKISL 285
Query: 253 VEALTGCT-VQLTTLDGR----NLTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIR 307
VEALTG V LT LDGR N+ P V+ P V+GEGMP+ K KGDL +
Sbjct: 286 VEALTGFNRVVLTHLDGRGIQLNVQQPNGKVLRPGQVLKVEGEGMPM-KRSDAKGDLYLV 344
Query: 308 FQIKFPTNLTSDQKSGIQQL---LPKP 331
I+FP + + +Q++ LP P
Sbjct: 345 VDIEFPEDGWLKNDAAVQKIKDALPAP 371
>Os05g0334400 Heat shock protein DnaJ family protein
Length = 447
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 194 LTIDIKPGWKKGTKVTFPKKGNE-KPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISL 252
+++ + G G+++ +GN + P DL I+ S KRD +++YT ++S
Sbjct: 301 ISLKVPAGVDSGSRLRVRSEGNAGRRGGPPGDLYVFIDVLSDPVLKRDGTNILYTCKVSY 360
Query: 253 VEALTGCTVQLTTLDGR-NLTVPVKSVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIK 311
++A+ G TV++ T+DG +L +P S P + V+ +G+P+ + + +GD +R Q++
Sbjct: 361 IDAILGTTVKVPTVDGMVDLKIP--SGTQPGTTLVMSKKGVPLLGKSNARGDQLVRVQVE 418
Query: 312 FPTNLTSDQKSGIQQL 327
P L+SD++ I++L
Sbjct: 419 IPKRLSSDERKLIEEL 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,822,339
Number of extensions: 318263
Number of successful extensions: 469
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 16
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)