Os05g0127400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog 1) (HDJ-1).
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Os05g0127400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DnaJ homolog subfamily B member 1 (Heat shock 40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog 1) (HDJ-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.51 | 0.284 | 9.67 | 0.349 | 0.376 | 0.874 | -1.84 | -2.34 | 0.212 | 22.2 | 19.93 | 892 | -- | -- |
| 39.89 | 0.294 | 9.68 | 0.315 | 0.387 | 0.625 | -1.08 | -- | 0.197 | 1.31 | 30.32 | 1023 | -- | -- |
| 43.41 | 0.309 | 9.69 | 0.209 | 0.397 | 0.221 | -- | -1.28 | 0.085 | 6.57 | 19.99 | 902 | -- | -- |
| 46.48 | 0.318 | 9.68 | 0.325 | 0.377 | 0.635 | -- | -- | 0.183 | 0.903 | 30 | 1020 | -- | -- |
| 42.24 | 0.303 | 9.68 | 0.299 | -- | 0.608 | -- | -1.87 | 0.161 | -- | 29.19 | 469 | -- | -- |
| 48.17 | 0.325 | 9.7 | 0.231 | 0.383 | -- | -1.3 | -- | 0.0856 | 3.26 | -- | -- | -- | -- |
| 52.66 | 0.34 | 9.69 | 0.256 | 0.41 | -- | -- | -- | 0.0923 | 4.48 | -- | -- | -- | -- |
| 48.95 | 0.326 | 9.68 | 0.291 | -- | 0.607 | -- | -- | 0.15 | -- | 80.03 | 465 | -- | -- |
| 49.12 | 0.326 | 9.69 | -- | 0.368 | 0.647 | -- | -- | 0.14 | 0.631 | 20 | 1008 | -- | -- |
| 61.67 | 0.367 | 9.69 | 0.272 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 54.39 | 0.345 | 9.69 | -- | 0.415 | -- | -- | -- | 0.0637 | 4.46 | -- | -- | -- | -- |
| 51.19 | 0.333 | 9.69 | -- | -- | 0.599 | -- | -- | 0.116 | -- | 103.4 | 449 | -- | -- |
| 63.62 | 0.372 | 9.7 | -- | -- | -- | -- | -- | 0.0729 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.10 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 7 |
| 2 | 37.13 | radiation | 20 | 720 | < th | dose independent | rect. | 6 | 22 |
| 3 | 37.19 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 22 |
| 5 | 37.27 | radiation | 20 | 720 | < th | dose independent | sin | 20 | NA |
| 6 | 37.28 | radiation | 20 | 720 | < th | dose independent | rect. | 6 | 19 |
| 24 | 37.57 | radiation | 20 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 30 | 37.66 | radiation | 20 | 720 | < th | dose independent | rect. | 21 | 21 |
| 31 | 37.66 | radiation | 20 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 45 | 37.79 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 48 | 37.81 | radiation | 20 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 61 | 37.87 | radiation | 20 | 720 | < th | dose dependent | sin | 21 | NA |
| 70 | 37.93 | radiation | 20 | 720 | < th | dose independent | no | NA | NA |
| 80 | 37.99 | radiation | 20 | 720 | < th | dose independent | rect. | 16 | 23 |
| 89 | 38.03 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 12 |
| 115 | 38.11 | radiation | 20 | 720 | < th | dose dependent | rect. | 9 | 9 |
| 145 | 38.19 | radiation | 40 | 720 | < th | dose dependent | rect. | 11 | 22 |
| 148 | 38.20 | radiation | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 153 | 38.22 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 191 | 38.33 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 22 |
| 192 | 38.33 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 213 | 38.37 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 233 | 38.40 | radiation | 1 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 249 | 38.41 | radiation | 1 | 720 | > th | dose dependent | sin | 20 | NA |
| 250 | 38.41 | radiation | 10 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 331 | 38.50 | radiation | 20 | 720 | < th | dose dependent | no | NA | NA |
| 368 | 38.59 | radiation | 20 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 423 | 38.71 | radiation | 20 | 720 | > th | dose independent | rect. | 11 | 2 |
| 446 | 38.74 | radiation | 20 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 527 | 38.83 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 539 | 38.86 | radiation | 20 | 720 | > th | dose independent | rect. | 11 | 5 |
| 639 | 38.96 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 14 |
| 668 | 38.97 | radiation | 1 | 720 | > th | dose dependent | no | NA | NA |
| 754 | 39.00 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 835 | 39.08 | radiation | 10 | 90 | < th | dose independent | sin | 19 | NA |
| 983 | 39.24 | radiation | 20 | 720 | > th | dose independent | sin | 20 | NA |