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Os03g0787300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DnaJ homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0154) R2 : 0.615
β1 : 0.698 (0.0562) R2dD : 0.135 R2D : 0.0741
β2 : 0.866 (0.0367) R2dC : 0.474 R2C : 0.451
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.234 (0.0327) R2dN8 : 0.0578 R2N8 : 0.0118
σ : 0.288
deviance : 37.93
__
_____
C
peak time of C : 10.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.72 0.252 14.5 0.692 0.32 -0.622 0.163 -0.584 0.184 7.31 6.472 48 -- --
29.71 0.254 14.5 0.676 0.364 -0.523 0.72 -- 0.192 8.91 6.272 49 -- --
28.77 0.25 14.5 0.691 0.327 -0.619 -- -0.627 0.184 7.3 6.346 49 -- --
31.15 0.26 14.5 0.696 0.312 -0.632 -- -- 0.183 7.14 6.027 49 -- --
32.03 0.265 14.5 0.689 -- -0.704 -- -0.562 0.211 -- 6.346 49 -- --
35.81 0.281 14.5 0.669 0.869 -- 0.713 -- 0.232 10.8 -- -- -- --
37.93 0.288 14.5 0.698 0.866 -- -- -- 0.234 10.8 -- -- -- --
33.98 0.273 14.5 0.693 -- -0.704 -- -- 0.208 -- 6.027 49 -- --
43.81 0.308 14.6 -- 0.313 -0.635 -- -- 0.111 6.95 4.985 49 -- --
84.34 0.429 14.5 0.68 -- -- -- -- 0.229 -- -- -- -- --
50.76 0.333 14.5 -- 0.861 -- -- -- 0.156 10.7 -- -- -- --
46.62 0.319 14.6 -- -- -0.699 -- -- 0.129 -- 5.756 23 -- --
96.54 0.459 14.6 -- -- -- -- -- 0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.53 temperature 20.0 720 > th dose independent rect. 17 2
3 28.85 radiation 10.0 10 < th dose dependent rect. 13 17
5 28.91 radiation 1.0 90 < th dose dependent sin 3 NA
6 28.94 radiation 1.0 90 > th dose independent sin 4 NA
11 29.08 radiation 1.0 90 < th dose independent rect. 1 15
12 29.09 radiation 1.0 90 < th dose dependent rect. 1 18
16 29.14 radiation 1.0 90 < th dose independent sin 4 NA
24 29.21 radiation 10.0 30 < th dose dependent rect. 7 23
28 29.25 radiation 1.0 90 < th dose dependent rect. 1 15
40 29.33 radiation 1.0 90 < th dose independent rect. 1 18
49 29.45 radiation 10.0 30 < th dose dependent rect. 18 23
63 29.55 radiation 1.0 90 < th dose independent rect. 1 10
65 29.55 radiation 1.0 90 < th dose independent rect. 21 23
69 29.58 radiation 1.0 90 < th dose independent rect. 1 7
84 29.67 radiation 1.0 90 > th dose independent rect. 15 23
86 29.68 radiation 1.0 90 < th dose dependent rect. 21 23
89 29.69 wind 9.0 90 < th dose dependent rect. 17 12
93 29.72 radiation 1.0 90 < th dose dependent rect. 1 10
97 29.73 temperature 20.0 90 > th dose independent rect. 1 4
103 29.75 radiation 1.0 90 < th dose dependent rect. 1 7
106 29.77 humidity 80.0 90 > th dose independent rect. 1 4
119 29.82 radiation 1.0 90 > th dose independent rect. 4 14
130 29.82 temperature 10.0 720 > th dose dependent rect. 17 2
141 29.84 radiation 10.0 30 < th dose dependent no NA NA
153 29.85 temperature 10.0 90 > th dose dependent rect. 1 4
156 29.86 humidity 50.0 90 > th dose independent rect. 13 16
164 29.87 radiation 10.0 30 < th dose dependent rect. 15 23
166 29.88 radiation 10.0 30 < th dose dependent rect. 1 23
179 29.97 humidity 50.0 10 > th dose dependent rect. 11 19
187 30.01 radiation 1.0 90 < th dose independent rect. 17 23
212 30.08 precipitation 0.1 720 < th dose independent rect. 5 2
213 30.08 wind 5.0 90 < th dose independent rect. 17 12
214 30.08 precipitation 0.1 720 < th dose dependent rect. 5 2
222 30.10 radiation 10.0 90 < th dose independent rect. 12 17
230 30.13 wind 1.0 720 > th dose independent rect. 17 2
231 30.13 temperature 15.0 270 > th dose dependent rect. 1 1
232 30.13 humidity 50.0 90 > th dose dependent rect. 1 4
240 30.16 wind 9.0 720 < th dose independent rect. 17 2
241 30.16 radiation 20.0 720 < th dose independent rect. 17 2
250 30.18 humidity 50.0 90 > th dose independent rect. 11 18
255 30.20 temperature 15.0 720 > th dose independent rect. 5 2
262 30.21 atmosphere 1015.0 720 < th dose independent rect. 17 2
265 30.21 temperature 10.0 720 > th dose independent rect. 19 22
269 30.23 temperature 20.0 270 > th dose independent rect. 1 1
270 30.23 wind 7.0 720 < th dose independent rect. 5 2
273 30.23 temperature 30.0 720 < th dose independent rect. 5 2
274 30.23 humidity 50.0 720 > th dose independent rect. 5 2
276 30.23 atmosphere 995.0 720 > th dose independent rect. 5 2
277 30.23 atmosphere 1015.0 720 < th dose independent rect. 5 2
278 30.23 radiation 30.0 720 < th dose independent rect. 5 2
280 30.23 temperature 10.0 720 > th dose independent rect. 7 22
281 30.23 wind 9.0 90 < th dose dependent rect. 1 4
285 30.24 humidity 90.0 10 < th dose independent rect. 6 12
291 30.25 radiation 10.0 10 < th dose dependent rect. 2 4
293 30.26 wind 9.0 90 < th dose independent rect. 1 4
294 30.26 temperature 10.0 90 > th dose independent rect. 1 4
296 30.26 temperature 30.0 90 < th dose independent rect. 1 4
297 30.26 humidity 50.0 90 > th dose independent rect. 1 4
300 30.26 atmosphere 995.0 90 > th dose independent rect. 1 4
301 30.26 atmosphere 1010.0 90 < th dose independent rect. 1 4
308 30.26 temperature 10.0 90 > th dose independent rect. 5 20
319 30.29 wind 3.0 90 < th dose independent rect. 1 4
328 30.31 wind 9.0 720 < th dose independent rect. 7 22
330 30.32 precipitation 0.1 90 < th dose independent rect. 1 4
331 30.32 precipitation 0.1 90 < th dose dependent rect. 1 4
340 30.35 wind 9.0 90 < th dose independent rect. 5 20
342 30.35 humidity 50.0 10 > th dose dependent rect. 13 17
349 30.38 humidity 90.0 720 < th dose independent rect. 17 2
352 30.39 precipitation 0.1 720 < th dose independent rect. 17 2
353 30.39 radiation 1.0 90 > th dose independent rect. 5 6
366 30.39 precipitation 0.1 720 < th dose dependent rect. 17 2
368 30.40 humidity 80.0 270 > th dose independent rect. 1 1
370 30.40 wind 9.0 90 < th dose dependent rect. 5 12
372 30.41 radiation 1.0 90 > th dose independent no NA NA
373 30.41 radiation 1.0 90 < th dose independent no NA NA
430 30.41 radiation 1.0 90 < th dose independent rect. 9 23
431 30.41 radiation 1.0 90 < th dose independent rect. 12 23
444 30.43 temperature 20.0 90 > th dose independent rect. 13 16
445 30.43 radiation 1.0 90 < th dose independent rect. 12 20
450 30.44 radiation 40.0 720 < th dose dependent rect. 17 2
458 30.46 temperature 20.0 90 > th dose independent rect. 11 18
463 30.46 wind 9.0 90 < th dose dependent rect. 5 8
475 30.49 precipitation 0.1 90 < th dose independent rect. 5 20
476 30.49 radiation 1.0 90 < th dose independent rect. 15 23
480 30.49 precipitation 0.1 90 < th dose dependent rect. 5 20
516 30.54 radiation 1.0 90 < th dose independent rect. 7 23
536 30.58 radiation 10.0 30 < th dose dependent rect. 18 12
543 30.59 humidity 80.0 10 > th dose dependent rect. 1 15
551 30.60 atmosphere 1015.0 90 < th dose dependent rect. 1 4
552 30.60 temperature 10.0 30 > th dose dependent rect. 6 12
553 30.60 radiation 10.0 30 < th dose dependent rect. 18 14
555 30.61 humidity 50.0 720 > th dose independent rect. 17 2
573 30.63 radiation 1.0 90 < th dose independent rect. 17 18
586 30.65 radiation 1.0 90 < th dose independent rect. 17 15
602 30.67 temperature 10.0 90 > th dose dependent rect. 5 6
627 30.70 radiation 1.0 90 < th dose independent rect. 1 23
670 30.75 wind 9.0 270 < th dose dependent rect. 1 1
702 30.79 wind 3.0 30 < th dose independent rect. 6 5
704 30.79 wind 9.0 720 < th dose dependent rect. 5 2
705 30.79 temperature 10.0 90 > th dose dependent rect. 5 8
734 30.83 temperature 20.0 90 > th dose independent rect. 18 11
754 30.85 wind 9.0 90 < th dose dependent rect. 5 6
762 30.85 wind 9.0 90 < th dose dependent rect. 5 20
797 30.89 wind 3.0 270 < th dose independent rect. 1 1
810 30.90 temperature 30.0 10 < th dose independent rect. 12 18
811 30.90 atmosphere 995.0 90 > th dose independent rect. 5 20
813 30.90 humidity 50.0 270 > th dose dependent rect. 1 1
816 30.90 temperature 10.0 90 > th dose dependent rect. 18 11
841 30.93 wind 9.0 270 < th dose independent rect. 1 1
842 30.93 temperature 10.0 270 > th dose independent rect. 1 1
844 30.93 temperature 30.0 270 < th dose independent rect. 1 1
845 30.93 humidity 50.0 270 > th dose independent rect. 1 1
848 30.93 atmosphere 995.0 270 > th dose independent rect. 1 1
849 30.93 atmosphere 1010.0 270 < th dose independent rect. 1 1
851 30.93 radiation 1.0 270 < th dose independent rect. 1 1
856 30.93 precipitation 0.1 270 < th dose independent rect. 1 1
861 30.93 temperature 10.0 270 > th dose independent rect. 2 23
862 30.93 radiation 1.0 270 < th dose dependent rect. 1 1
867 30.93 precipitation 0.1 270 < th dose dependent rect. 1 1
877 30.94 humidity 50.0 90 > th dose independent rect. 17 12
909 30.96 temperature 20.0 90 > th dose independent rect. 5 6
913 30.96 humidity 50.0 720 > th dose dependent rect. 5 2
922 30.97 wind 9.0 720 < th dose independent rect. 7 6
926 30.97 atmosphere 995.0 90 > th dose dependent rect. 2 3
934 30.98 radiation 1.0 720 > th dose independent rect. 5 2
945 30.99 atmosphere 995.0 90 > th dose independent rect. 1 14
948 30.99 temperature 10.0 10 > th dose dependent rect. 6 19
973 31.01 wind 9.0 720 < th dose independent rect. 19 6
974 31.01 temperature 10.0 720 > th dose independent rect. 19 6
975 31.01 temperature 30.0 720 < th dose independent rect. 19 6
976 31.01 humidity 50.0 720 > th dose independent rect. 19 6
977 31.01 atmosphere 995.0 720 > th dose independent rect. 19 6
978 31.01 radiation 1.0 720 < th dose independent rect. 19 6
983 31.01 temperature 10.0 720 > th dose independent rect. 1 18
985 31.01 radiation 1.0 720 < th dose dependent rect. 19 6