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Os01g0239100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0236) R2 : 0.674
β1 : 1.29 (0.0862) R2dD : 0.166 R2D : 0.0895
β2 : 1.48 (0.0558) R2dC : 0.501 R2C : 0.469
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.453 (0.0502) R2dN8 : 0.0779 R2N8 : 0.0171
σ : 0.443
deviance : 89.3
__
_____
C
peak time of C : 11.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.78 0.401 10.7 1.32 0.571 0.835 -0.891 1.06 0.4 10.7 5.29 75 -- --
74.3 0.401 10.7 1.3 0.562 0.841 0.226 -- 0.394 10.9 5.27 75 -- --
74.04 0.401 10.7 1.31 0.609 0.839 -- 0.513 0.408 10.4 4.972 96 -- --
74.54 0.402 10.7 1.3 0.562 0.841 -- -- 0.394 10.9 5.27 75 -- --
80.38 0.418 10.7 1.33 -- 1.21 -- 0.576 0.381 -- 4.97 80 -- --
88.88 0.442 10.6 1.28 1.48 -- 0.313 -- 0.452 11.9 -- -- -- --
89.3 0.443 10.6 1.29 1.48 -- -- -- 0.453 11.9 -- -- -- --
79.9 0.416 10.7 1.31 -- 1.21 -- -- 0.357 -- 4.97 72 -- --
117.73 0.505 10.7 -- 0.801 0.731 -- -- 0.281 10.9 10.01 111 -- --
226.27 0.703 10.7 1.24 -- -- -- -- 0.434 -- -- -- -- --
133.08 0.54 10.7 -- 1.46 -- -- -- 0.31 11.8 -- -- -- --
124.59 0.52 10.7 -- -- 1.21 -- -- 0.223 -- 2.21 98 -- --
267.12 0.763 10.7 -- -- -- -- -- 0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.52 temperature 10.0 10 > th dose dependent rect. 6 20
9 68.07 radiation 10.0 90 < th dose dependent sin 3 NA
19 69.05 radiation 1.0 90 > th dose independent sin 2 NA
20 69.13 radiation 1.0 90 < th dose independent sin 2 NA
31 69.83 radiation 10.0 90 < th dose dependent rect. 3 12
65 71.30 radiation 30.0 90 < th dose dependent rect. 12 18
66 71.31 radiation 1.0 270 < th dose dependent rect. 23 19
72 71.48 temperature 10.0 90 > th dose dependent rect. 21 14
77 71.56 radiation 10.0 90 < th dose dependent rect. 23 23
86 71.73 humidity 80.0 10 > th dose dependent rect. 2 16
89 71.76 humidity 60.0 10 > th dose dependent rect. 2 13
90 71.76 humidity 80.0 10 > th dose dependent rect. 2 14
102 71.89 radiation 1.0 270 < th dose independent rect. 23 19
111 72.04 radiation 1.0 270 < th dose independent rect. 23 17
132 72.18 radiation 1.0 90 < th dose independent rect. 3 15
144 72.25 humidity 80.0 10 > th dose dependent sin 2 NA
147 72.27 wind 1.0 270 > th dose independent rect. 9 10
165 72.43 wind 9.0 90 < th dose dependent rect. 6 11
166 72.43 radiation 10.0 90 < th dose dependent rect. 11 20
175 72.51 wind 9.0 90 < th dose dependent rect. 6 20
179 72.54 radiation 1.0 270 > th dose independent sin 6 NA
193 72.60 radiation 1.0 270 < th dose independent sin 6 NA
208 72.68 wind 5.0 90 < th dose independent rect. 6 20
238 72.82 precipitation 0.1 90 < th dose independent rect. 2 4
240 72.82 precipitation 0.1 90 < th dose dependent rect. 2 4
241 72.83 humidity 60.0 10 > th dose independent rect. 12 18
262 72.93 radiation 10.0 90 < th dose dependent rect. 7 23
263 72.94 radiation 20.0 10 < th dose dependent rect. 2 13
273 73.01 radiation 10.0 90 < th dose dependent rect. 15 23
303 73.09 temperature 10.0 10 > th dose dependent rect. 22 14
309 73.11 radiation 10.0 90 < th dose dependent no NA NA
313 73.12 wind 5.0 90 < th dose independent rect. 2 4
314 73.12 precipitation 0.1 90 < th dose independent rect. 6 20
317 73.12 precipitation 0.1 90 < th dose dependent rect. 6 20
344 73.22 temperature 30.0 270 < th dose dependent rect. 1 4
355 73.25 radiation 1.0 90 > th dose independent rect. 6 12
366 73.30 temperature 10.0 270 > th dose independent rect. 1 3
368 73.30 temperature 30.0 270 < th dose independent rect. 1 3
369 73.30 humidity 50.0 270 > th dose independent rect. 1 3
372 73.30 atmosphere 995.0 270 > th dose independent rect. 1 3
373 73.30 atmosphere 1010.0 270 < th dose independent rect. 1 3
375 73.30 radiation 1.0 270 < th dose independent rect. 1 3
382 73.30 temperature 10.0 270 > th dose independent rect. 4 21
388 73.30 wind 9.0 90 < th dose dependent rect. 2 4
418 73.33 precipitation 0.1 10 < th dose independent rect. 2 4
419 73.33 precipitation 0.1 10 < th dose dependent rect. 2 4
438 73.34 humidity 80.0 10 > th dose independent rect. 2 13
461 73.42 temperature 30.0 90 < th dose dependent rect. 3 3
465 73.44 wind 9.0 90 < th dose independent rect. 6 20
478 73.47 temperature 20.0 90 > th dose independent rect. 6 20
487 73.52 temperature 10.0 10 > th dose dependent rect. 6 6
489 73.52 humidity 50.0 10 > th dose dependent rect. 2 18
528 73.66 precipitation 0.1 270 < th dose independent rect. 4 21
529 73.66 precipitation 0.1 270 < th dose dependent rect. 4 21
530 73.67 wind 7.0 270 < th dose independent rect. 2 1
542 73.70 wind 9.0 90 < th dose dependent rect. 6 6
544 73.71 temperature 10.0 270 > th dose independent rect. 2 1
546 73.71 temperature 30.0 270 < th dose independent rect. 2 1
547 73.71 humidity 50.0 270 > th dose independent rect. 2 1
550 73.71 atmosphere 995.0 270 > th dose independent rect. 2 1
551 73.71 atmosphere 1010.0 270 < th dose independent rect. 2 1
553 73.71 radiation 1.0 270 < th dose independent rect. 2 1
558 73.71 precipitation 0.1 270 < th dose independent rect. 2 1
572 73.71 radiation 20.0 90 < th dose independent rect. 12 18
574 73.71 temperature 10.0 270 > th dose independent rect. 3 23
575 73.71 radiation 1.0 270 < th dose dependent rect. 2 1
580 73.71 precipitation 0.1 270 < th dose dependent rect. 2 1
586 73.73 temperature 25.0 90 < th dose independent rect. 1 6
587 73.73 atmosphere 1015.0 90 < th dose independent rect. 6 20
630 73.80 temperature 30.0 270 < th dose dependent rect. 2 1
639 73.83 humidity 80.0 10 > th dose independent rect. 2 18
641 73.84 wind 1.0 270 > th dose independent rect. 1 4
646 73.85 humidity 50.0 90 > th dose dependent rect. 2 4
649 73.86 wind 5.0 90 < th dose independent rect. 6 11
664 73.90 temperature 25.0 90 > th dose independent rect. 21 14
676 73.94 radiation 30.0 1440 < th dose independent rect. 3 4
689 73.97 temperature 30.0 10 < th dose dependent rect. 2 5
696 74.00 wind 5.0 10 < th dose independent rect. 2 4
721 74.05 temperature 30.0 10 < th dose dependent rect. 2 18
773 74.17 humidity 90.0 10 < th dose independent rect. 6 10
796 74.19 wind 9.0 1440 < th dose independent rect. 3 4
797 74.19 temperature 10.0 1440 > th dose independent rect. 3 4
800 74.19 temperature 30.0 1440 < th dose independent rect. 3 4
804 74.19 humidity 50.0 1440 > th dose independent rect. 3 4
809 74.19 atmosphere 995.0 1440 > th dose independent rect. 3 4
816 74.19 temperature 10.0 1440 > th dose independent rect. 7 20
821 74.19 radiation 20.0 10 < th dose dependent rect. 2 7
849 74.23 wind 9.0 10 < th dose independent rect. 6 20
851 74.23 temperature 20.0 10 > th dose independent rect. 6 20
861 74.25 atmosphere 995.0 90 > th dose dependent rect. 2 4
868 74.26 humidity 50.0 270 > th dose dependent rect. 2 1
871 74.26 humidity 50.0 10 > th dose dependent rect. 12 19
890 74.31 wind 7.0 270 < th dose independent rect. 23 7
891 74.31 precipitation 0.1 270 < th dose independent rect. 23 7
895 74.31 precipitation 0.1 270 < th dose dependent rect. 23 7
900 74.32 temperature 15.0 270 > th dose independent rect. 23 7
919 74.36 temperature 30.0 270 < th dose independent rect. 23 7
920 74.36 humidity 50.0 270 > th dose independent rect. 23 7
923 74.36 atmosphere 995.0 270 > th dose independent rect. 23 7
924 74.36 radiation 20.0 270 < th dose independent rect. 23 7
927 74.36 temperature 10.0 270 > th dose independent rect. 6 17
933 74.37 humidity 50.0 270 > th dose independent rect. 20 14
939 74.38 temperature 10.0 270 > th dose independent rect. 10 10
940 74.38 atmosphere 1015.0 270 < th dose independent rect. 10 10
941 74.38 temperature 10.0 270 > th dose independent rect. 20 14
942 74.38 atmosphere 995.0 270 > th dose independent rect. 20 14
945 74.39 wind 9.0 270 < th dose independent rect. 20 14
951 74.40 humidity 90.0 10 < th dose independent rect. 6 6
960 74.41 wind 9.0 270 < th dose dependent rect. 2 1
971 74.44 radiation 10.0 10 < th dose independent rect. 2 13
985 74.45 radiation 10.0 90 < th dose dependent rect. 1 23