Os03g0648400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DnaJ protein homolog (DNAJ-1).
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Os03g0648400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DnaJ protein homolog (DNAJ-1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.7 | 0.311 | 13.9 | 1.28 | 1.07 | 0.687 | 0.21 | -0.212 | 0.771 | 2.3 | 19.79 | 2899 | -- | -- |
| 43.73 | 0.308 | 13.8 | 1.32 | 1.07 | 0.726 | 0.219 | -- | 0.784 | 2.31 | 19.6 | 2888 | -- | -- |
| 43.83 | 0.308 | 13.8 | 1.28 | 1.08 | 0.706 | -- | -0.169 | 0.773 | 2.31 | 19.62 | 2916 | -- | -- |
| 43.88 | 0.309 | 13.8 | 1.31 | 1.07 | 0.737 | -- | -- | 0.776 | 2.3 | 19.7 | 2916 | -- | -- |
| 108.98 | 0.486 | 13.8 | 1.28 | -- | 0.818 | -- | -0.126 | 0.758 | -- | 20.3 | 2486 | -- | -- |
| 53.32 | 0.342 | 13.8 | 1.7 | 1.09 | -- | 0.175 | -- | 0.95 | 2.34 | -- | -- | -- | -- |
| 53.43 | 0.342 | 13.8 | 1.69 | 1.09 | -- | -- | -- | 0.949 | 2.35 | -- | -- | -- | -- |
| 109.01 | 0.486 | 13.8 | 1.3 | -- | 0.843 | -- | -- | 0.761 | -- | 20.3 | 2486 | -- | -- |
| 53.26 | 0.34 | 13.9 | -- | 1.04 | 1.43 | -- | -- | 0.542 | 2.14 | 16.8 | 47520 | -- | -- |
| 124.23 | 0.521 | 13.8 | 1.74 | -- | -- | -- | -- | 0.976 | -- | -- | -- | -- | -- |
| 128.8 | 0.531 | 13.8 | -- | 1.13 | -- | -- | -- | 0.761 | 2.37 | -- | -- | -- | -- |
| 120.45 | 0.511 | 13.9 | -- | -- | 1.5 | -- | -- | 0.448 | -- | 17.96 | 47520 | -- | -- |
| 203.84 | 0.666 | 13.8 | -- | -- | -- | -- | -- | 0.783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.49 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |
| 5 | 41.73 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 6 | 41.76 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 7 | 41.79 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 12 |
| 9 | 41.80 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 16 | 41.88 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 10 |
| 19 | 41.92 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 12 |
| 22 | 41.98 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 37 | 42.15 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |
| 39 | 42.16 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 14 |
| 52 | 42.25 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 55 | 42.28 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 66 | 42.36 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 70 | 42.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 93 | 42.53 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 11 |
| 117 | 42.63 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 143 | 42.76 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 152 | 42.78 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 160 | 42.81 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 178 | 42.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 179 | 42.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 199 | 42.98 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 216 | 43.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 237 | 43.12 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 250 | 43.15 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 255 | 43.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 256 | 43.17 | wind | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 282 | 43.23 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 6 |
| 290 | 43.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 346 | 43.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 361 | 43.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 407 | 43.47 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 417 | 43.49 | wind | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 427 | 43.50 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 487 | 43.61 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 502 | 43.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 512 | 43.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 12 |
| 542 | 43.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 552 | 43.72 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 555 | 43.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 558 | 43.73 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 576 | 43.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 613 | 43.80 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 10 |
| 625 | 43.81 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 4 |
| 626 | 43.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 646 | 43.84 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 656 | 43.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 657 | 43.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 679 | 43.87 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 747 | 43.94 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 825 | 44.02 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 863 | 44.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 940 | 44.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 980 | 44.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 984 | 44.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |