Os01g0875700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os01g0875700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.44 | 0.631 | 6.67 | -1.58 | 1.06 | -1.32 | -0.19 | -1.44 | -0.181 | 9.07 | 24.59 | 723 | -- | -- |
| 181.9 | 0.628 | 6.69 | -1.77 | 1.19 | -1.19 | -0.222 | -- | -0.219 | 8.88 | 28.7 | 759 | -- | -- |
| 180.55 | 0.626 | 6.67 | -1.58 | 1.06 | -1.33 | -- | -1.54 | -0.176 | 9.05 | 24.5 | 710 | -- | -- |
| 182.16 | 0.629 | 6.7 | -1.82 | 1.15 | -1.2 | -- | -- | -0.245 | 9.02 | 28.16 | 780 | -- | -- |
| 223.89 | 0.701 | 6.72 | -1.71 | -- | -1.27 | -- | -0.551 | -0.196 | -- | 24.8 | 1525 | -- | -- |
| 202.97 | 0.668 | 6.65 | -1.49 | 0.901 | -- | -0.493 | -- | 0.00749 | 8.86 | -- | -- | -- | -- |
| 203.79 | 0.669 | 6.65 | -1.51 | 0.902 | -- | -- | -- | 0.00736 | 8.88 | -- | -- | -- | -- |
| 224.43 | 0.701 | 6.73 | -1.78 | -- | -1.23 | -- | -- | -0.213 | -- | 24.8 | 1525 | -- | -- |
| 260.38 | 0.756 | 6.63 | -- | 0.875 | -0.452 | -- | -- | 0.0918 | 8.4 | 28.16 | 780 | -- | -- |
| 250.22 | 0.739 | 6.67 | -1.51 | -- | -- | -- | -- | 0.0138 | -- | -- | -- | -- | -- |
| 263.59 | 0.759 | 6.61 | -- | 0.9 | -- | -- | -- | 0.175 | 9 | -- | -- | -- | -- |
| 302.28 | 0.812 | 6.66 | -- | -- | -0.65 | -- | -- | 0.0774 | -- | 24.8 | 1525 | -- | -- |
| 310.05 | 0.822 | 6.64 | -- | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.92 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 2 | 172.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 18 | 176.19 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 23 | 176.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 26 | 176.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 27 | 176.83 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 35 | 177.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 52 | 177.21 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 9 |
| 90 | 177.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 91 | 177.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 103 | 177.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 155 | 177.52 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 158 | 177.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 207 | 177.65 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 208 | 177.68 | temperature | 30 | 14400 | < th | dose independent | sin | 1 | NA |
| 217 | 177.73 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 237 | 177.78 | temperature | 30 | 14400 | > th | dose independent | sin | 1 | NA |
| 238 | 177.78 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 249 | 177.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 312 | 177.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 350 | 178.00 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 354 | 178.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 355 | 178.04 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 391 | 178.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 19 |
| 402 | 178.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 403 | 178.08 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 433 | 178.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 486 | 178.10 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 496 | 178.14 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 625 | 178.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 628 | 178.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 640 | 178.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 646 | 178.28 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 657 | 178.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 685 | 178.44 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 691 | 178.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 697 | 178.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 702 | 178.51 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 754 | 178.63 | wind | 5 | 43200 | > th | dose independent | sin | 17 | NA |
| 765 | 178.66 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 800 | 178.68 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 866 | 178.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 868 | 178.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 877 | 178.85 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 883 | 178.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 957 | 179.00 | wind | 5 | 43200 | < th | dose independent | sin | 17 | NA |