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Os05g0334400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0147) R2 : 0.492
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.762 (0.0384) R2dC : 0.44 R2C : 0.431
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.201 (0.0309) R2dN8 : 0.0608 R2N8 : 0.0525
σ : 0.277
deviance : 34.96
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_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.56 0.247 13.3 -0.162 0.956 -0.617 -0.313 0.294 -0.224 20.5 22.6 10 -- --
27.79 0.246 13.3 -0.163 0.946 -0.604 -0.0659 -- -0.223 20.4 23.1 9 -- --
27.73 0.245 13.3 -0.157 0.94 -0.591 -- 0.14 -0.224 20.4 23.04 9 -- --
27.8 0.246 13.3 -0.162 0.943 -0.605 -- -- -0.224 20.4 23.43 9 -- --
30.53 0.257 13.3 -0.166 -- -1.01 -- 0.456 -0.276 -- 10.01 742 -- --
34.42 0.275 13.3 -0.141 0.76 -- -0.0845 -- -0.216 17.9 -- -- -- --
34.43 0.275 13.3 -0.141 0.76 -- -- -- -0.216 17.9 -- -- -- --
30.51 0.257 13.3 -0.152 -- -1.02 -- -- -0.261 -- 10 748 -- --
28.5 0.249 13.3 -- 0.941 -0.596 -- -- -0.206 20.4 23.1 9 -- --
64.38 0.375 13.3 -0.164 -- -- -- -- -0.234 -- -- -- -- --
34.96 0.277 13.3 -- 0.762 -- -- -- -0.201 17.8 -- -- -- --
31.11 0.26 13.3 -- -- -1.02 -- -- -0.249 -- 10 748 -- --
65.09 0.377 13.3 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.25 temperature 20 90 > th dose independent rect. 13 18
2 25.31 temperature 20 270 > th dose independent rect. 11 19
3 25.32 radiation 20 270 < th dose dependent rect. 1 15
15 25.59 temperature 20 90 > th dose independent rect. 15 16
22 25.71 radiation 10 270 < th dose independent rect. 24 17
25 25.72 radiation 20 270 < th dose dependent sin 6 NA
61 26.09 radiation 20 90 < th dose dependent sin 3 NA
71 26.21 radiation 40 10 < th dose dependent rect. 12 20
73 26.23 radiation 20 10 < th dose dependent sin 2 NA
87 26.38 radiation 40 270 < th dose independent rect. 11 19
90 26.39 radiation 40 270 < th dose independent rect. 9 22
127 26.60 radiation 10 270 < th dose independent sin 6 NA
139 26.64 radiation 10 90 < th dose independent sin 2 NA
201 26.82 radiation 1 270 > th dose dependent sin 9 NA
214 26.87 radiation 40 270 < th dose dependent rect. 11 19
251 27.01 radiation 30 10 < th dose independent rect. 12 20
255 27.03 radiation 20 90 < th dose independent rect. 24 23
259 27.05 radiation 10 270 > th dose independent sin 7 NA
292 27.14 radiation 10 10 < th dose independent sin 2 NA
318 27.19 humidity 90 14400 > th dose dependent rect. 3 7
331 27.23 radiation 20 30 < th dose independent rect. 3 19
339 27.24 humidity 90 14400 > th dose dependent rect. 4 4
349 27.26 radiation 20 90 < th dose independent rect. 11 21
364 27.28 radiation 40 90 < th dose dependent rect. 9 23
369 27.29 radiation 30 10 < th dose dependent rect. 9 23
388 27.33 humidity 90 14400 > th dose dependent rect. 13 19
395 27.34 humidity 90 14400 > th dose dependent rect. 15 17
401 27.35 radiation 20 10 < th dose independent rect. 10 22
402 27.35 radiation 20 90 < th dose independent rect. 9 23
405 27.35 temperature 15 10 > th dose dependent rect. 15 16
406 27.35 humidity 90 14400 > th dose dependent rect. 18 16
445 27.39 temperature 15 10 > th dose dependent rect. 13 18
450 27.40 radiation 1 90 > th dose dependent sin 5 NA
458 27.41 radiation 30 10 < th dose dependent rect. 3 13
466 27.42 temperature 30 270 < th dose dependent rect. 19 6
488 27.43 radiation 30 10 < th dose dependent rect. 11 23
489 27.44 temperature 20 14400 < th dose independent rect. 20 7
493 27.44 humidity 90 14400 > th dose dependent sin 6 NA
509 27.45 temperature 30 14400 < th dose dependent rect. 7 1
527 27.46 temperature 10 14400 > th dose dependent rect. 7 1
541 27.47 temperature 20 14400 > th dose independent rect. 20 7
573 27.49 humidity 90 14400 > th dose dependent sin 13 NA
584 27.49 humidity 90 14400 > th dose dependent rect. 24 22
589 27.50 temperature 20 14400 > th dose independent rect. 18 11
609 27.51 humidity 90 14400 > th dose dependent rect. 5 1
614 27.51 humidity 90 14400 > th dose dependent rect. 24 16
622 27.52 temperature 20 14400 < th dose independent rect. 24 1
630 27.52 humidity 90 14400 > th dose dependent rect. 24 19
645 27.53 humidity 90 14400 > th dose dependent rect. 1 13
673 27.54 radiation 30 10 < th dose dependent rect. 24 23
685 27.55 humidity 90 14400 > th dose dependent no NA NA
722 27.57 temperature 20 14400 > th dose independent rect. 24 1
737 27.57 temperature 10 14400 > th dose dependent rect. 4 7
738 27.57 temperature 30 14400 < th dose dependent rect. 4 7
750 27.58 temperature 20 14400 > th dose independent sin 12 NA
760 27.58 temperature 30 14400 < th dose dependent rect. 3 11
772 27.59 temperature 20 14400 < th dose independent sin 13 NA
815 27.60 temperature 30 90 < th dose dependent rect. 21 6
840 27.61 temperature 30 14400 < th dose dependent sin 4 NA
935 27.63 temperature 30 14400 < th dose dependent rect. 20 19
976 27.64 temperature 30 14400 < th dose dependent rect. 21 17
988 27.64 humidity 90 14400 > th dose dependent rect. 3 23
999 27.65 temperature 10 14400 > th dose dependent sin 4 NA