Os05g0156500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Apobec-1 binding protein 2.
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Os05g0156500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Apobec-1 binding protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.29 | 0.522 | 11.2 | 0.161 | 0.423 | 1.31 | -0.529 | -1.73 | 0.35 | 22.2 | 9.738 | 3919 | -- | -- |
| 124.79 | 0.52 | 11.2 | 0.292 | 0.477 | 1.41 | -0.516 | -- | 0.284 | 22.5 | 8.384 | 11229 | -- | -- |
| 124.33 | 0.519 | 11.2 | 0.172 | 0.419 | 1.3 | -- | -1.79 | 0.352 | 22.5 | 9.796 | 3858 | -- | -- |
| 126.14 | 0.523 | 11.2 | 0.274 | 0.476 | 1.44 | -- | -- | 0.25 | 22.5 | 8.342 | 11252 | -- | -- |
| 134.73 | 0.541 | 11.2 | 0.125 | -- | 1.42 | -- | -1.89 | 0.325 | -- | 10.05 | 3767 | -- | -- |
| 159.18 | 0.591 | 11.1 | 1.16 | 0.508 | -- | -0.509 | -- | 0.722 | 22.7 | -- | -- | -- | -- |
| 160.25 | 0.593 | 11.1 | 1.18 | 0.51 | -- | -- | -- | 0.723 | 22.9 | -- | -- | -- | -- |
| 139.29 | 0.55 | 11.2 | 0.263 | -- | 1.51 | -- | -- | 0.244 | -- | 9.293 | 10958 | -- | -- |
| 127.13 | 0.525 | 11.2 | -- | 0.479 | 1.44 | -- | -- | 0.192 | 22.6 | 10.21 | 22938 | -- | -- |
| 176.4 | 0.621 | 11.1 | 1.19 | -- | -- | -- | -- | 0.727 | -- | -- | -- | -- | -- |
| 196.99 | 0.657 | 11.1 | -- | 0.52 | -- | -- | -- | 0.592 | 23 | -- | -- | -- | -- |
| 140.15 | 0.551 | 11.2 | -- | -- | 1.49 | -- | -- | 0.182 | -- | 5.581 | 22489 | -- | -- |
| 213.85 | 0.683 | 11.1 | -- | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 110.97 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 4 | 112.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 5 | 112.91 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 10 | 114.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 12 | 114.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 13 | 114.24 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 31 | 115.63 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 34 | 115.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 53 | 116.01 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 114 | 117.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 132 | 117.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 133 | 117.15 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 135 | 117.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 136 | 117.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 166 | 117.65 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 15 |
| 192 | 117.92 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 206 | 117.97 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 213 | 118.01 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 244 | 118.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 8 |
| 248 | 118.13 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 250 | 118.13 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 254 | 118.14 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 274 | 118.17 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 298 | 118.23 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 335 | 118.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 338 | 118.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 344 | 118.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 346 | 118.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 358 | 118.49 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 387 | 118.58 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 412 | 118.63 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 415 | 118.65 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 443 | 118.76 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 455 | 118.80 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 479 | 118.89 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 502 | 118.99 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 549 | 119.13 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 595 | 119.26 | humidity | 90.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 654 | 119.42 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 725 | 119.61 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 18 |
| 770 | 119.76 | humidity | 90.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 796 | 119.80 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 802 | 119.81 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 873 | 120.01 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 894 | 120.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 895 | 120.09 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 901 | 120.10 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 906 | 120.12 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 907 | 120.12 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 991 | 120.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 993 | 120.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 998 | 120.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 2 |