Os04g0549600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os04g0549600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.35 | 0.255 | 15.2 | 0.114 | 0.553 | 1.22 | -0.199 | -1.66 | 0.16 | 1.66 | 21.5 | 1181 | -- | -- |
| 31.59 | 0.262 | 15.2 | 0.507 | 0.599 | 1.1 | -0.319 | -- | 0.278 | 1.49 | 20.35 | 2599 | -- | -- |
| 29.49 | 0.253 | 15.2 | 0.0899 | 0.55 | 1.23 | -- | -1.8 | 0.154 | 1.7 | 21.65 | 1181 | -- | -- |
| 32.02 | 0.264 | 15.2 | 0.515 | 0.602 | 1.11 | -- | -- | 0.279 | 1.55 | 20.22 | 2597 | -- | -- |
| 45.62 | 0.315 | 15.2 | -0.0598 | -- | 1.48 | -- | -2.33 | 0.107 | -- | 22.14 | 1100 | -- | -- |
| 68.04 | 0.387 | 15.1 | 0.947 | 0.751 | -- | -0.223 | -- | 0.531 | 1.45 | -- | -- | -- | -- |
| 68.24 | 0.387 | 15.1 | 0.954 | 0.751 | -- | -- | -- | 0.532 | 1.47 | -- | -- | -- | -- |
| 48.62 | 0.325 | 15.2 | 0.54 | -- | 1.35 | -- | -- | 0.259 | -- | 20.6 | 1092 | -- | -- |
| 35.64 | 0.278 | 15.2 | -- | 0.665 | 1.36 | -- | -- | 0.18 | 1.46 | 17.7 | 5477 | -- | -- |
| 102.87 | 0.474 | 15.1 | 0.984 | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
| 92.25 | 0.449 | 15.1 | -- | 0.768 | -- | -- | -- | 0.426 | 1.52 | -- | -- | -- | -- |
| 54.8 | 0.345 | 15.2 | -- | -- | 1.71 | -- | -- | 0.163 | -- | 17.4 | 1092 | -- | -- |
| 128.43 | 0.529 | 15.1 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 13 | 30.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 15 | 30.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 66 | 30.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 98 | 30.94 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 119 | 31.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 121 | 31.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 124 | 31.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 240 | 31.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 292 | 31.62 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 305 | 31.64 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 322 | 31.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 344 | 31.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 10 |
| 404 | 31.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 548 | 31.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 774 | 32.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 819 | 32.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 853 | 32.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 884 | 32.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 9 |