Os05g0562300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DnaJ-like protein.
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Os05g0562300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DnaJ-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.62 | 0.806 | 9.59 | 0.618 | 5.43 | -3.81 | 0.443 | -0.333 | 0.105 | 9.93 | 30.26 | 11 | 1.97 | 14 |
| 294.64 | 0.799 | 9.59 | 0.618 | 5.43 | -3.81 | 0.292 | -- | 0.105 | 9.93 | 30.26 | 11 | 1.97 | 14 |
| 292.97 | 0.797 | 9.57 | 0.696 | 5.56 | -3.78 | -- | 0.0888 | 0.14 | 9.94 | 31 | 10 | 1.96 | 14 |
| 292.33 | 0.796 | 9.58 | 0.725 | 5.63 | -3.83 | -- | -- | 0.142 | 9.88 | 31.3 | 10 | 1.96 | 14 |
| 1532.42 | 1.83 | 9.66 | 0.894 | -- | -3.09 | -- | -3 | 0.393 | -- | 21.6 | 4 | 1.83 | 14.2 |
| 456.31 | 1 | 9.54 | 1.07 | 4.25 | -- | 1.26 | -- | 0.525 | 10.9 | -- | -- | -- | -- |
| 462.95 | 1.01 | 9.54 | 1.12 | 4.25 | -- | -- | -- | 0.529 | 10.9 | -- | -- | -- | -- |
| 1539.75 | 1.84 | 9.68 | 0.785 | -- | -2.44 | -- | -- | 0.377 | -- | 21.6 | 4 | 1.83 | 14.2 |
| 300.91 | 0.808 | 9.56 | -- | 5.9 | -4.05 | -- | -- | 0.109 | 9.84 | 32.32 | 12 | 1.95 | 14 |
| 1581.1 | 1.86 | 9.65 | 1.03 | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
| 496.26 | 1.04 | 9.57 | -- | 4.24 | -- | -- | -- | 0.404 | 10.9 | -- | -- | -- | -- |
| 1168.76 | 1.6 | 9.85 | -- | -- | -4.48 | -- | -- | -0.378 | -- | 28.78 | 3 | 16.3 | 24 |
| 1609.32 | 1.87 | 9.68 | -- | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 5 | 308.89 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 40 | 325.01 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 51 | 326.94 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 87 | 332.60 | radiation | 10 | 30 | < th | dose dependent | sin | 3 | NA |
| 118 | 337.90 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 15 |
| 152 | 341.80 | radiation | 10 | 30 | < th | dose dependent | rect. | 2 | 15 |
| 165 | 343.01 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 194 | 345.12 | radiation | 1 | 90 | > th | dose independent | sin | 3 | NA |
| 195 | 345.15 | radiation | 1 | 90 | < th | dose independent | sin | 3 | NA |
| 199 | 345.59 | radiation | 10 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 203 | 345.77 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 206 | 345.79 | radiation | 10 | 30 | < th | dose dependent | no | NA | NA |
| 212 | 345.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 223 | 346.28 | radiation | 10 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 228 | 346.52 | temperature | 25 | 30 | < th | dose independent | rect. | 24 | 17 |
| 272 | 348.60 | temperature | 25 | 30 | > th | dose independent | sin | 4 | NA |
| 284 | 349.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 294 | 349.33 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 299 | 349.49 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 17 |
| 319 | 350.74 | temperature | 25 | 30 | < th | dose independent | sin | 4 | NA |
| 324 | 350.98 | radiation | 10 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 347 | 351.99 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 396 | 354.11 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 413 | 354.67 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 18 |
| 442 | 355.95 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 7 |
| 445 | 356.09 | radiation | 1 | 90 | < th | dose independent | rect. | 1 | 16 |
| 518 | 358.45 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 9 |
| 534 | 358.83 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 579 | 359.84 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 8 |
| 603 | 360.39 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 677 | 362.02 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 12 |
| 731 | 363.22 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 13 |
| 765 | 364.01 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 14 |
| 769 | 364.11 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 22 |
| 777 | 364.24 | radiation | 10 | 30 | < th | dose dependent | rect. | 2 | 8 |
| 796 | 364.70 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 10 |
| 918 | 366.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 1000 | 368.02 | humidity | 80 | 10 | > th | dose dependent | sin | 1 | NA |