BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0278000 Os03g0278000|AK100908
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0278000 UDP-glucuronic acid decarboxylase 703 0.0
Os01g0315800 UDP-glucuronic acid decarboxylase (EC 4.1.1.35) 471 e-133
Os01g0837300 UDP-glucuronic acid decarboxylase 466 e-131
Os07g0674100 UDP-glucuronic acid decarboxylase 465 e-131
Os05g0363200 UDP-glucuronic acid decarboxylase 461 e-130
Os03g0280800 UDP-glucuronic acid decarboxylase (EC 4.1.1.35) 459 e-129
AK103728 287 1e-77
AK109046 124 1e-28
Os01g0969100 NAD-dependent epimerase/dehydratase family pro... 115 6e-26
Os10g0417600 NAD-dependent epimerase/dehydratase family pro... 110 2e-24
Os03g0278200 NAD-dependent epimerase/dehydratase family pro... 109 3e-24
Os11g0591100 NAD-dependent epimerase/dehydratase family pro... 107 1e-23
Os02g0791500 Similar to Nucleotide sugar epimerase-like pro... 80 3e-15
Os06g0652400 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-e... 75 1e-13
Os09g0504000 Similar to Nucleotide sugar epimerase-like pro... 74 2e-13
Os05g0595100 Similar to UDPglucose 4-epimerase-like protein 71 1e-12
Os06g0652300 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-e... 68 9e-12
>Os03g0278000 UDP-glucuronic acid decarboxylase
Length = 350
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/350 (97%), Positives = 340/350 (97%)
Query: 1 MAQKEANGSSNGEHXXXXXXXXXXLRFSKFFQANLRILVTGGAGFIGSHLVDKLMENEKH 60
MAQKEANGSSNGEH LRFSKFFQANLRILVTGGAGFIGSHLVDKLMENEKH
Sbjct: 1 MAQKEANGSSNGEHTTRPPPTPSPLRFSKFFQANLRILVTGGAGFIGSHLVDKLMENEKH 60
Query: 61 EVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQPLLVEVDQIYHLACPASPIFYKHNPV 120
EVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQPLLVEVDQIYHLACPASPIFYKHNPV
Sbjct: 61 EVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQPLLVEVDQIYHLACPASPIFYKHNPV 120
Query: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDE 180
KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDE
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDE 180
Query: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPG 240
GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPG
Sbjct: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPG 240
Query: 241 TQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTEN 300
TQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTEN
Sbjct: 241 TQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTEN 300
Query: 301 TPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVPKKNQA 350
TPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVPKKNQA
Sbjct: 301 TPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVPKKNQA 350
>Os01g0315800 UDP-glucuronic acid decarboxylase (EC 4.1.1.35)
Length = 425
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 220/308 (71%), Positives = 259/308 (84%), Gaps = 1/308 (0%)
Query: 35 LRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQ 94
LR+LVTGGAGF+GSHLVD+L+E VIV DNFFTG KDN+ + +PRFE+IRHDV +
Sbjct: 113 LRVLVTGGAGFVGSHLVDRLVE-RGDSVIVVDNFFTGRKDNVAHHLANPRFEVIRHDVVE 171
Query: 95 PLLVEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 154
P+L+EVDQIYHLACPASP+ YK+NP+KTIKTNV+GTLNMLGLAKR+GA+ LLTSTSEVYG
Sbjct: 172 PILLEVDQIYHLACPASPVHYKYNPIKTIKTNVVGTLNMLGLAKRIGAKFLLTSTSEVYG 231
Query: 155 DPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 214
DPL+HPQ E YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGPRM
Sbjct: 232 DPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANLEVRIARIFNTYGPRMC 291
Query: 215 IDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPG 274
IDDGRVVSNF+AQA+R EPLTV G QTRSF YV+D+V GL+ LM G++ GP NLGNPG
Sbjct: 292 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMSLMEGEHIGPFNLGNPG 351
Query: 275 EFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLM 334
EFTMLELA+ V++ I+P + NT DDP +RKPDIT+AKE+LGWEPK+ LR+GL LM
Sbjct: 352 EFTMLELAKVVQDTIDPNARIEFRPNTADDPHKRKPDITRAKELLGWEPKVPLREGLPLM 411
Query: 335 EDDFRERL 342
DFR+R+
Sbjct: 412 VTDFRKRI 419
>Os01g0837300 UDP-glucuronic acid decarboxylase
Length = 410
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 256/305 (83%), Gaps = 1/305 (0%)
Query: 38 LVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQPLL 97
+VTGGAGF+GSHLVD+L+E + VIV DNFFTG KDN+ + +PRFEL+RHDV +P+L
Sbjct: 104 VVTGGAGFVGSHLVDRLLE-QGDSVIVVDNFFTGRKDNVAHHLRNPRFELLRHDVVEPIL 162
Query: 98 VEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL 157
+EVD+IYHLACPASP+ YK+NP+KTIKTNV+GTLNMLGLAKR+GAR LLTSTSEVYGDPL
Sbjct: 163 LEVDRIYHLACPASPVHYKYNPIKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPL 222
Query: 158 EHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD 217
EHPQ E YWG+VNPIGVRSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM +DD
Sbjct: 223 EHPQKETYWGHVNPIGVRSCYDEGKRTAETLTMDYHRGGGVEVRIARIFNTYGPRMCLDD 282
Query: 218 GRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFT 277
GRVVSNF+AQA+R +P+TV G QTRSF YV+D+V GL+ LM GD+ GP NLGNPGEFT
Sbjct: 283 GRVVSNFVAQALRRQPMTVYGDGKQTRSFQYVSDLVAGLMALMEGDHIGPFNLGNPGEFT 342
Query: 278 MLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDD 337
MLELA+ VKE I+P T+ NT DDP RKPDITKAK +L WEPK+ LR+GL LM D
Sbjct: 343 MLELAQVVKETIDPMATIEFKPNTADDPHMRKPDITKAKHLLRWEPKVSLREGLPLMVKD 402
Query: 338 FRERL 342
FR+R+
Sbjct: 403 FRQRI 407
>Os07g0674100 UDP-glucuronic acid decarboxylase
Length = 445
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/311 (70%), Positives = 256/311 (82%), Gaps = 1/311 (0%)
Query: 32 QANLRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHD 91
+ LR++VTGGAGF+GSHLVD+L+ V+V DN FTG K+N+ G+P FE+IRHD
Sbjct: 123 KKGLRVVVTGGAGFVGSHLVDRLLA-RGDSVMVVDNLFTGRKENVLHHAGNPNFEMIRHD 181
Query: 92 VTQPLLVEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 151
V +P+L+EVDQIYHLACPASP+ YKHNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 182 VVEPILLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 241
Query: 152 VYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 211
VYGDPL+HPQ E YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGP
Sbjct: 242 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANLEVRIARIFNTYGP 301
Query: 212 RMNIDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLG 271
RM IDDGRVVSNF+AQA+R EPLTV G QTRSF YV+D+V GL+KLM G++ GP NLG
Sbjct: 302 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLG 361
Query: 272 NPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGL 331
NPGEFTMLELA+ V++ I+P + NT DDP +RKPDI++AKE+LGWEPKI L GL
Sbjct: 362 NPGEFTMLELAKVVQDTIDPNARIEFRPNTADDPHKRKPDISRAKELLGWEPKIPLHKGL 421
Query: 332 VLMEDDFRERL 342
LM DFR+R+
Sbjct: 422 PLMVQDFRDRI 432
>Os05g0363200 UDP-glucuronic acid decarboxylase
Length = 447
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/308 (70%), Positives = 254/308 (82%), Gaps = 1/308 (0%)
Query: 35 LRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQ 94
LR+LVTGGAGF+GSHLVD+L+E VIV DN FTG K+N+ G+P FE+IRHDV +
Sbjct: 125 LRVLVTGGAGFVGSHLVDRLVE-RGDSVIVVDNLFTGRKENVVHHFGNPNFEMIRHDVVE 183
Query: 95 PLLVEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 154
P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKR+ AR LLTSTSEVYG
Sbjct: 184 PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVVGTLNMLGLAKRINARFLLTSTSEVYG 243
Query: 155 DPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 214
DPL+HPQ E YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGPRM
Sbjct: 244 DPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANLEVRIARIFNTYGPRMC 303
Query: 215 IDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPG 274
IDDGRVVSNF+AQA+R EPLTV G QTRSF YV+D+V GL++LM G++ GP NLGNPG
Sbjct: 304 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPG 363
Query: 275 EFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLM 334
EFTMLELA+ V++ I+P + NT DDP +RKPDI +AKE+LGWEPKI L GL LM
Sbjct: 364 EFTMLELAKVVQDTIDPNAKIEFRPNTQDDPHKRKPDIGRAKELLGWEPKIPLHKGLPLM 423
Query: 335 EDDFRERL 342
DFR+R+
Sbjct: 424 VTDFRKRI 431
>Os03g0280800 UDP-glucuronic acid decarboxylase (EC 4.1.1.35)
Length = 396
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/313 (69%), Positives = 255/313 (81%), Gaps = 1/313 (0%)
Query: 35 LRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQ 94
LR++VTGGAGF+GSHLVD+L+ VIV DNFFTG K+N+ + + PRFELIRHDV +
Sbjct: 85 LRVVVTGGAGFVGSHLVDELLARGD-SVIVVDNFFTGRKENVARHLADPRFELIRHDVVE 143
Query: 95 PLLVEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 154
P+L+EVDQIYHLACPASP+ YK NP+KTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 144 PILLEVDQIYHLACPASPVHYKFNPIKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYG 203
Query: 155 DPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 214
DPLEHPQ E+YWG+VNPIGVRSCYDEGKR AETL DYHR G+E+RIARIFNTYGPRM
Sbjct: 204 DPLEHPQKESYWGHVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 263
Query: 215 IDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPG 274
+DDGRVVSNF+AQ +R +P+TV G QTRSF YV+D+V+GLI LM ++ GP NLGNPG
Sbjct: 264 LDDGRVVSNFVAQTLRKQPMTVYGDGKQTRSFQYVSDLVDGLITLMESEHIGPFNLGNPG 323
Query: 275 EFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLM 334
EFTMLELA+ VKE I+P V NT DDP RKPDI+KAK +L WEPKI L+ GL M
Sbjct: 324 EFTMLELAQVVKETIDPSARVEFKPNTADDPHMRKPDISKAKSLLHWEPKISLKQGLPRM 383
Query: 335 EDDFRERLQVPKK 347
DF++R+ K+
Sbjct: 384 VSDFQKRIMDEKR 396
>AK103728
Length = 209
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/191 (70%), Positives = 155/191 (81%)
Query: 152 VYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 211
VYGDPL+HPQ E YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGP
Sbjct: 6 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANLEVRIARIFNTYGP 65
Query: 212 RMNIDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLG 271
RM IDDGRVVSNF+AQA+R EPLTV G QTRSF YV+D+V GL+KLM G++ GP NLG
Sbjct: 66 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLG 125
Query: 272 NPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGL 331
NPGEFTMLELA+ V++ I+P + NT DDP +RKPDI++AKE+LGWEPKI L GL
Sbjct: 126 NPGEFTMLELAKVVQDTIDPNARIEFRPNTADDPHKRKPDISRAKELLGWEPKIPLHKGL 185
Query: 332 VLMEDDFRERL 342
LM DFR+R+
Sbjct: 186 PLMVQDFRDRI 196
>AK109046
Length = 350
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 22/315 (6%)
Query: 32 QANLRILVTGGAGFIGSHLVDKLMENEKHEVIVAD----NFFTGSKDNLKKWIGHPRFEL 87
+ LRI V GG GFIGSH +L E E H V VAD ++F S+ I ++
Sbjct: 4 KTKLRIFVAGGGGFIGSHTAKRLKE-EGHFVRVADWKRQHYFEDSQ------ICDEFHDV 56
Query: 88 IRHDVTQPL-LVE-VDQIYHLACPASPI-FYKHNPVKTIKTNVIGTLNMLGLAKRVGA-- 142
D+ + + E +D++Y A + F + N + N++ + NM+ A+R G+
Sbjct: 57 DLRDLNNCIKMCEGMDEVYDFAADMGGMGFIQSNHSVILYNNIMISFNMVEAARRSGSVK 116
Query: 143 RILLTSTSEVYGD--PLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 200
R +S++ +Y + LE + P + Y K V E Y++ GIE
Sbjct: 117 RFFYSSSACIYPEYRQLETANPGLKESDAWPAQPQDAYGLEKLVTEEFCKYYNKDFGIEF 176
Query: 201 RIARIFNTYGPRMNIDDGR--VVSNFIAQA-VRGEPLTVQKPGTQTRSFCYVADMVNGLI 257
RI R N YGP GR + F +A V G+ + G QTRSFCY+ D V G++
Sbjct: 177 RIGRFHNIYGPHGTWKGGREKAPAAFCRKALVCGDVFEMWGDGEQTRSFCYIDDCVEGVL 236
Query: 258 KLMNGDNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTE-NTPDDPRQRKPDITKAK 316
+LM D PIN+G+ +M ++A V + + + + P+ R R D T +
Sbjct: 237 RLMRSDVREPINIGSEEMVSMNDMAHLVLDFAGKKDSTKLHHIPGPEGVRGRNSDNTLIR 296
Query: 317 EVLGWEPKIVLRDGL 331
E LGW P I L+DGL
Sbjct: 297 EKLGWAPIINLKDGL 311
>Os01g0969100 NAD-dependent epimerase/dehydratase family protein
Length = 398
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 150/351 (42%), Gaps = 54/351 (15%)
Query: 33 ANLRILVTGGAGFIGSHLVDKLMENEKHEVIVAD-------NFFTGSKDNLKKWIGHPRF 85
A L I + G GFIGSHL +KLM H V D + + +L I R
Sbjct: 24 APLTICMIGAGGFIGSHLCEKLMAETAHVVYAVDVYCDKIRHLVDPAPPHLHGRISFHRL 83
Query: 86 ELIRHDVTQPLLVEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGARIL 145
+ + L+ D +LA +P Y P+ TI +N I L ++ R++
Sbjct: 84 NIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLI 143
Query: 146 LTSTSEVYGD------PLEHP-------------QTEAYWGNVNPIGVRSCYDEGKRVAE 186
ST EVYG P +HP ++ +G + + R Y K++ E
Sbjct: 144 HFSTCEVYGKTIGSFLPTDHPLRKEPEFYVLKEDESPCIFGPI--VKQRWSYACAKQLIE 201
Query: 187 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG---------RVVSNFIAQAVRGEPLTVQ 237
L+F ++G+E I R FN GPRM+ G RV++ F +R EPL +
Sbjct: 202 RLIFAEGAENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRREPLKLV 261
Query: 238 KPGTQTRSFCYVADMVNGLIKLMNGD---NTGPINLGNP-GEFTMLELAENVKE------ 287
G R+F Y+ D + + ++ N N+GNP E T+ +LAE + E
Sbjct: 262 DGGQSQRTFVYIKDAIEAVHLMIENPARANGQIFNVGNPNNEVTVRQLAEMMTEVYANVS 321
Query: 288 ----LINPEVTVTMTE---NTPDDPRQRKPDITKAKEVLGWEPKIVLRDGL 331
L P + V+ + DD +R PD+T + LGW PK L+D L
Sbjct: 322 GEPPLDEPMIDVSSKQFYGEGYDDSDKRIPDMTIINKQLGWNPKTPLKDLL 372
>Os10g0417600 NAD-dependent epimerase/dehydratase family protein
Length = 378
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 160/361 (44%), Gaps = 31/361 (8%)
Query: 1 MAQKEANGSSNGEHXXXXXXXXXXLRFSKFFQANLRILVTGGAGFIGSHLVDKLMENEKH 60
M E NG++ GE+ R + LRI +TG GFIGSH+ +L ++E H
Sbjct: 1 MGSSEKNGTAYGEYTYAELE-----REQYWPSEKLRISITGAGGFIGSHIARRL-KSEGH 54
Query: 61 EVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQPLLV---EVDQIYHLACPASPI-FYK 116
+I +D +++ + + F L+ V L VD +++LA + F +
Sbjct: 55 YIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQ 111
Query: 117 HNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLEHPQTEAYWGNVN----- 170
N + N + + NML A+ G R S++ +Y P+ + NV+
Sbjct: 112 SNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIY------PEFKQLETNVSLKESD 165
Query: 171 --PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIA 226
P + Y K E L Y + GIE R+ R N YGP GR + F
Sbjct: 166 AWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCR 225
Query: 227 QA-VRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGDNTGPINLGNPGEFTMLELAENV 285
+A + + G QTRSF ++ + V G+++L D P+N+G+ +M E+AE +
Sbjct: 226 KAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEII 285
Query: 286 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVP 345
+ E+ + P+ R R D T KE LGW P + L+DGL +E+++
Sbjct: 286 LSFEDRELPIHHIPG-PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE 344
Query: 346 K 346
K
Sbjct: 345 K 345
>Os03g0278200 NAD-dependent epimerase/dehydratase family protein
Length = 675
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 148/311 (47%), Gaps = 23/311 (7%)
Query: 37 ILVTGGAGFIGSHLVDKLMENEKH-EVIVADNF-FTGSKDNLKKWIGHPRFELIRHDVTQ 94
IL+TG AGFI SH+ ++L+ N H +++V D + S NL P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLVRNYPHYKIVVLDKLDYCSSLSNLNPSRPSPNFKFVKGDIAS 68
Query: 95 PLLV-------EVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 145
LV +D I H A N + K N+ GT +L K G R +
Sbjct: 69 ADLVNYLLTTESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 146 LTSTSEVYGDPLEHPQTEAYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 203
ST EVYG+ E +A GN + + + Y K AE L+ Y R +G+ +
Sbjct: 129 HVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
Query: 204 RIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMNGD 263
R N YGP N +++ FI A+RG PL + G+ RS+ Y D+ +++
Sbjct: 185 RGNNVYGP--NQFPEKLIPKFILLAMRGLPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG 242
Query: 264 NTGPI-NLGNPGEFTMLELAENVKEL--INPEVTVTMTENTPDDPRQRKPDITKAKEVLG 320
G + N+G E ++++A+++ +L ++ E + EN P + ++ D K K+ LG
Sbjct: 243 EVGHVYNIGTVKERRVIDVAKDICKLFGLDTEKVIRFVENRPFNDQRYFLDDQKLKK-LG 301
Query: 321 WEPKIVLRDGL 331
W + + +GL
Sbjct: 302 WAERTLWEEGL 312
>Os11g0591100 NAD-dependent epimerase/dehydratase family protein
Length = 371
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 148/325 (45%), Gaps = 22/325 (6%)
Query: 35 LRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTQ 94
LRI +TG GFI SH+ +L ++E H +I +D +++ + + F L+ V
Sbjct: 23 LRISITGAGGFIASHIARRL-KSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMD 78
Query: 95 PLL---VEVDQIYHLACPASPI-FYKHNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 149
L VD +++LA + F + N + N + + NML A+ G R S+
Sbjct: 79 NCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 138
Query: 150 SEVYG-----DPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 204
+ +Y D + + W P + Y K E L Y + GIE R+ R
Sbjct: 139 ACIYPEFKQLDTVVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGR 194
Query: 205 IFNTYGPRMNIDDGR--VVSNFIAQAVRG-EPLTVQKPGTQTRSFCYVADMVNGLIKLMN 261
N YGP GR + F +A+ + + G QTRSF ++ + V G+++L
Sbjct: 195 FHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTK 254
Query: 262 GDNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGW 321
D P+N+G+ +M E+AE V N ++ + P+ R R D T KE LGW
Sbjct: 255 SDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPG-PEGVRGRNSDNTLIKEKLGW 313
Query: 322 EPKIVLRDGLVLMEDDFRERLQVPK 346
P + L+DGL + +E+L+ K
Sbjct: 314 APTMRLKDGLRITYFWIKEQLEKEK 338
>Os02g0791500 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 437
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 140/335 (41%), Gaps = 48/335 (14%)
Query: 33 ANLRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKK-----WIGHPRFEL 87
A + +LVTG AGF+G+H + V+ DNF + +LKK H F +
Sbjct: 95 AGMSVLVTGAAGFVGTH-CSLALRKRGDGVVGIDNFNSYYDPSLKKARRSLLASHGVF-V 152
Query: 88 IRHDVTQPLL-------VEVDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRV 140
I D+ L V + HLA A + NP + +N+ G + +L K
Sbjct: 153 IEGDINDGRLLAKLFDVVPFTHVLHLAAQAGVRYAMENPASYVHSNIAGLVTLLEACKDA 212
Query: 141 GAR--ILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 198
+ I+ S+S VYG + P TE+ + P S Y K+ E + Y+ +G+
Sbjct: 213 DPQPAIVWASSSSVYGLNDKVPFTESDRTD-QPA---SLYAATKKAGEEITHTYNHIYGL 268
Query: 199 EIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPGTQ---TRSFCYVADMVNG 255
I R F YGP D +F ++G+P+TV + + R F Y+ D+V G
Sbjct: 269 SITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKNRVDLARDFTYIDDIVKG 326
Query: 256 LIKLMN---------GDNTGP-----INLGNPGEFTMLELAENVKELINPEVTVTMTENT 301
+ ++ G GP NLGN T+ N+ ++ + V +N
Sbjct: 327 CLGSLDTAGKSTGTGGKKRGPAPYRIFNLGNTSPVTV----PNLVSILEKHLRVKAKKNV 382
Query: 302 PDDPRQ-----RKPDITKAKEVLGWEPKIVLRDGL 331
+ P +I+ A++ LG++P L GL
Sbjct: 383 VEMPGNGDVPFTHANISLARQQLGYKPTTNLDVGL 417
>Os06g0652400 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
(GER1)
Length = 328
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 139/327 (42%), Gaps = 33/327 (10%)
Query: 36 RILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKKWIGHPRFELIRH-DVTQ 94
++ V G G +GS ++ L+ V+V H +L R DV
Sbjct: 20 KVFVAGHRGLVGSAILRHLVSLGFTNVVVRT---------------HAELDLTRQSDVEA 64
Query: 95 PLLVEVDQIYHLACPASPIFYKHN--PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 150
E+ + LA + ++ P I N+ N++ A + G+ ++L +S
Sbjct: 65 FFAAELPRYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALKCGSVRKLLFLGSS 124
Query: 151 EVYGD--PLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 208
+Y P P+ G + P Y K + Y QHG + A N
Sbjct: 125 CIYPKFAPQPIPENSLLSGPLEP--TNEWYAVAKIAGIKMCQAYRIQHGFDAISAMPTNL 182
Query: 209 YGPRMNI--DDGRVVSNFI-----AQAVRGEPLTVQKPGTQTRSFCYVADMVNGLIKLMN 261
YGP+ N ++ V+ I A+A + V G+ R F +V D+ + +I LM+
Sbjct: 183 YGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMD 242
Query: 262 G-DNTGPINLGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKAKEVLG 320
+N+G+ E T+ ELAE VKE++ + + + PD ++ D +K +E +G
Sbjct: 243 HYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQE-MG 301
Query: 321 WEPKIVLRDGLVLMEDDFRERLQVPKK 347
W+PK+ L++GLV + E + KK
Sbjct: 302 WKPKVPLKEGLVETYKWYVENVISAKK 328
>Os09g0504000 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 498
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 138/353 (39%), Gaps = 49/353 (13%)
Query: 34 NLRILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNLKK----WIGHPRFELIR 89
+ +LVTG AGF+G+H + V+ DNF LK+ + ++
Sbjct: 125 GIAVLVTGAAGFVGTH-CSLALRARGDGVLGLDNFNAYYDPELKRARQRLLAGRGVLVLD 183
Query: 90 HDVTQPLLVE-------VDQIYHLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVG- 141
D+ LL+E + HLA A + P + +NV G + +L +A +
Sbjct: 184 ADINDALLLEKLFDLVPFTHVLHLAAQAGVRYAMEAPQTYVASNVAGLVTVLEVAAKHAD 243
Query: 142 --ARILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 199
I+ S+S VYG + P +E + + P S Y K+ E + Y+ +G+
Sbjct: 244 PQPAIVWASSSSVYGLNTDAPFSEEHRTD-RPA---SLYAATKKAGEAIAHTYNHIYGLS 299
Query: 200 IRIARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQKPGTQT---RSFCYVADMVNGL 256
I R F YGP D F V GEP+T+ + R F Y+ D+V G
Sbjct: 300 ITGLRFFTVYGPWGRPDMAYFF--FAKSIVSGEPITLFRAADGADARRDFTYIDDVVKGC 357
Query: 257 IKLMNGDNT-------------GPI---NLGNPGEFTMLELAENVKELINPEV---TVTM 297
+ ++ P+ NLGN + + +++L+ + V M
Sbjct: 358 LGALDTSGKSTGSSKSGKKSGPAPLRVYNLGNTSPVPVTRMVAILEKLLGKKANKRIVAM 417
Query: 298 TENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLV----LMEDDFRERLQVPK 346
N D ++T A G+ P L GL D ++ +L VPK
Sbjct: 418 PSN--GDVPFTHANVTHAAHDFGYRPTTSLDAGLRHFVDWFADYYKLKLDVPK 468
>Os05g0595100 Similar to UDPglucose 4-epimerase-like protein
Length = 354
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 136/324 (41%), Gaps = 42/324 (12%)
Query: 37 ILVTGGAGFIGSHLVDKLMENEKHEVIVADNFFTGSKDNL---KKWIGHPRFELIRHDVT 93
ILVTGGAG+IGSH V +L++ V+V DN S+ + ++ GH L V
Sbjct: 9 ILVTGGAGYIGSHTVLQLLQ-LGFRVVVLDNLDNASELAILRVRELAGHNANNLDFRKVD 67
Query: 94 QPLLVEVDQIY---------HLACPASPIFYKHNPVKTIKTNVIGTLNMLGLAKRVGA-R 143
+DQI+ H A + P+ N+IGT+ +L + G +
Sbjct: 68 LRDKQALDQIFSSQRFEAVIHFAGLKAVGESVQKPLLYYDNNLIGTITLLQVMAAHGCTK 127
Query: 144 ILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRI 202
++ +S++ VYG P E P TE +P+ + Y K V E + D H +I +
Sbjct: 128 LVFSSSATVYGWPKEVPCTEE-----SPLCAMNPYGRTKLVIEDMCRDLHASDPNWKIIL 182
Query: 203 ARIFNTYGPR----MNIDDGRVVSN---FIAQAVRGE--PLTV------QKPGTQTRSFC 247
R FN G + D + +N F+ Q G LTV K GT R +
Sbjct: 183 LRYFNPVGAHPSGYIGEDPCGIPNNLMPFVQQVAVGRRPALTVYGTDYNTKDGTGVRDYI 242
Query: 248 YVADMVNGLIKLM-----NGDNTGP--INLGNPGEFTMLELAENVKELINPEVTVTMTEN 300
+V D+ +G I + + D G NLG ++LE+ ++ ++ +
Sbjct: 243 HVVDLADGHIAALRKLYEDSDRIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGR 302
Query: 301 TPDDPRQRKPDITKAKEVLGWEPK 324
P D KA++ L W+ K
Sbjct: 303 RPGDAEIVYAQTAKAEKELKWKAK 326
>Os06g0652300 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
(GER1)
Length = 347
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 119 PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRS 176
P + + N+ T+N++ A+R G+ ++L+ ++S +Y P E+ P
Sbjct: 107 PAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSE 166
Query: 177 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI--DDGRVVSNFIAQAVRGE-- 232
Y K + ++G++ A N YGPR + V+ I + R +
Sbjct: 167 WYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLE 226
Query: 233 ---PLTVQKPGTQTRSFCYVADMVNGLIKLM---NGDNTGPINLGNPGEFTMLELAENVK 286
+ V G R F +V D+ ++ LM +G+ +N+G+ E T+ ELAE V+
Sbjct: 227 GAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEH--VNVGSGEEVTVRELAEAVR 284
Query: 287 ELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVPK 346
++ E V P+ +R D + ++ LGWEP++ LRDG+ +D +R L+
Sbjct: 285 GVVGYEGVVAWDAARPEGVARRVVDSGRMRK-LGWEPRVALRDGI---QDLYRFYLRHEC 340
Query: 347 KNQA 350
QA
Sbjct: 341 GGQA 344
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,846,829
Number of extensions: 495135
Number of successful extensions: 1020
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 17
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)