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Os03g0278200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0289) R2 : 0.408
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.9 (0.0751) R2dC : 0.188 R2C : 0.176
β3 : -1.17 (0.0882) R2dE : 0.235 R2E : 0.215
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.151 (0.0614) R2dN8 : 0.0104 R2N8 : -0.00806
σ : 0.541
deviance : 134.98
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C
peak time of C : 6.93
E
wheather : humidity
threshold : 72.42
memory length : 1222
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.05 0.542 12 -0.333 0.867 -1.18 0.0948 -0.0303 -0.195 6.62 72.02 1276 -- --
131.98 0.535 12 -0.336 0.898 -1.22 0.0933 -- -0.191 6.94 72.57 1222 -- --
132.04 0.535 12 -0.329 0.897 -1.2 -- -0.0847 -0.202 6.88 72.73 1230 -- --
132 0.535 12 -0.341 0.904 -1.22 -- -- -0.194 6.95 72.59 1222 -- --
172.14 0.611 12 -0.319 -- -1.23 -- -0.000373 -0.18 -- 72.82 1282 -- --
181.85 0.632 11.9 -0.109 0.939 -- 0.259 -- -0.0397 5.71 -- -- -- --
182.01 0.632 11.9 -0.107 0.941 -- -- -- -0.0407 5.74 -- -- -- --
172.13 0.611 12 -0.324 -- -1.23 -- -- -0.186 -- 72.83 1283 -- --
134.98 0.541 11.9 -- 0.9 -1.17 -- -- -0.151 6.93 72.42 1222 -- --
227.92 0.705 11.9 -0.078 -- -- -- -- -0.0185 -- -- -- -- --
182.32 0.632 11.9 -- 0.939 -- -- -- -0.0288 5.75 -- -- -- --
174.81 0.616 12 -- -- -1.18 -- -- -0.147 -- 72.77 1294 -- --
228.08 0.705 11.9 -- -- -- -- -- -0.00981 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.36 humidity 80 1440 < th dose dependent rect. 16 20
4 136.14 humidity 70 1440 < th dose independent rect. 17 19
9 136.75 humidity 70 1440 > th dose independent rect. 18 18
20 137.69 humidity 70 1440 > th dose independent sin 10 NA
25 138.04 radiation 20 1440 > th dose dependent rect. 16 16
26 138.16 humidity 70 1440 < th dose independent sin 10 NA
45 138.95 radiation 20 1440 > th dose independent rect. 16 16
47 139.00 radiation 20 4320 > th dose dependent rect. 6 2
73 139.48 humidity 80 1440 < th dose dependent rect. 1 20
78 139.49 humidity 80 1440 < th dose dependent rect. 4 18
81 139.50 humidity 80 1440 < th dose dependent rect. 6 16
101 139.57 humidity 80 1440 < th dose dependent no NA NA
131 139.62 humidity 80 1440 < th dose dependent sin 10 NA
139 139.67 humidity 80 1440 < th dose dependent rect. 20 23
149 139.79 humidity 80 1440 < th dose dependent rect. 11 23
162 139.87 humidity 80 1440 < th dose independent rect. 7 1
164 139.92 humidity 80 1440 > th dose independent rect. 7 1
170 140.03 humidity 80 1440 < th dose dependent rect. 16 3
206 140.53 humidity 90 720 < th dose dependent rect. 17 6
264 140.96 humidity 90 1440 < th dose dependent sin 2 NA
284 141.01 humidity 50 1440 > th dose dependent rect. 6 13
288 141.02 humidity 80 1440 < th dose dependent sin 0 NA
295 141.06 radiation 10 1440 > th dose independent sin 12 NA
417 141.49 humidity 50 1440 > th dose dependent sin 1 NA
468 141.69 humidity 90 1440 < th dose dependent rect. 5 9
478 141.73 humidity 80 1440 < th dose independent rect. 6 8
512 141.88 humidity 50 4320 > th dose independent rect. 13 4
522 141.92 radiation 30 1440 > th dose independent rect. 7 1
565 142.08 humidity 50 1440 < th dose independent rect. 16 1
578 142.15 humidity 50 1440 < th dose dependent rect. 16 1
603 142.27 humidity 70 1440 > th dose independent rect. 9 18
604 142.27 humidity 70 1440 > th dose independent rect. 9 22
607 142.28 humidity 70 1440 > th dose independent rect. 9 16
617 142.31 humidity 70 1440 > th dose independent rect. 9 11
619 142.31 humidity 70 1440 > th dose independent rect. 9 14
628 142.33 temperature 25 720 > th dose dependent rect. 18 5
639 142.35 humidity 50 1440 > th dose dependent rect. 6 8
657 142.39 humidity 70 1440 < th dose independent rect. 9 22
672 142.42 humidity 70 1440 < th dose independent rect. 9 11
737 142.56 humidity 70 1440 > th dose independent rect. 6 21
739 142.57 humidity 70 1440 > th dose independent rect. 6 19
751 142.58 humidity 70 1440 > th dose independent rect. 2 23
755 142.59 humidity 70 1440 > th dose independent no NA NA
759 142.59 humidity 70 1440 > th dose independent rect. 24 20
764 142.59 radiation 10 1440 > th dose independent rect. 15 21
775 142.60 humidity 70 1440 > th dose independent rect. 6 14
789 142.61 humidity 70 1440 > th dose independent rect. 2 18
859 142.74 humidity 50 4320 > th dose independent rect. 15 2
863 142.76 humidity 60 1440 > th dose independent sin 14 NA
906 142.85 humidity 80 1440 > th dose independent rect. 6 8
973 143.09 radiation 20 1440 < th dose independent rect. 16 16
983 143.14 humidity 70 1440 < th dose independent no NA NA
984 143.14 humidity 70 1440 < th dose independent rect. 6 14