Os06g0652400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase (GER1); 21556- 22494.
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Os06g0652400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase (GER1); 21556- 22494.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.51 | 0.303 | 9.88 | 1.85 | 0.154 | 0.185 | 0.972 | -4.86 | 0.181 | 15.2 | 29.65 | 3209 | -- | -- |
| 45.45 | 0.316 | 10 | 0.948 | 0.00879 | -0.289 | -0.751 | -- | 0.0259 | 2.06 | 29.65 | 3209 | -- | -- |
| 44.15 | 0.309 | 9.88 | 1.9 | 0.189 | 0.231 | -- | -5.08 | 0.192 | 16.9 | 29.7 | 3235 | -- | -- |
| 46.54 | 0.318 | 9.96 | 0.894 | 0.145 | -0.376 | -- | -- | 0.147 | 15.1 | 30.35 | 3967 | -- | -- |
| 45.92 | 0.316 | 9.88 | 1.88 | -- | 0.235 | -- | -5.09 | 0.184 | -- | 29.67 | 3306 | -- | -- |
| 48.38 | 0.326 | 10 | 0.997 | 0.125 | -- | 0.896 | -- | 0.0293 | 15.3 | -- | -- | -- | -- |
| 50.6 | 0.333 | 10 | 1.01 | 0.158 | -- | -- | -- | 0.0351 | 17.3 | -- | -- | -- | -- |
| 45.96 | 0.317 | 10 | 0.942 | -- | -0.265 | -- | -- | -0.0122 | -- | 27.6 | 47125 | -- | -- |
| 67.65 | 0.383 | 9.99 | -- | 0.15 | -0.534 | -- | -- | 0.0165 | 17.3 | 29.66 | 3973 | -- | -- |
| 51.9 | 0.337 | 9.99 | 1.01 | -- | -- | -- | -- | 0.0311 | -- | -- | -- | -- | -- |
| 77.75 | 0.412 | 10 | -- | 0.141 | -- | -- | -- | -0.0779 | 17.5 | -- | -- | -- | -- |
| 53.09 | 0.339 | 10.1 | -- | -- | -0.747 | -- | -- | -0.367 | -- | 24.36 | 47520 | -- | -- |
| 78.78 | 0.414 | 10 | -- | -- | -- | -- | -- | -0.0808 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 18 | 41.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 19 | 41.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 31 | 41.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 45 | 41.52 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 57 | 41.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 62 | 41.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 69 | 41.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 79 | 41.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 80 | 41.67 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 81 | 41.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 94 | 41.71 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 114 | 41.73 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 140 | 41.76 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 146 | 41.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 153 | 41.80 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 21 |
| 189 | 41.84 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |
| 193 | 41.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 221 | 41.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 222 | 41.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 17 |
| 241 | 41.87 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 333 | 41.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 363 | 41.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 376 | 41.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 397 | 41.92 | temperature | 30 | 4320 | > th | dose independent | sin | 0 | NA |
| 422 | 41.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 464 | 41.95 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 633 | 41.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 668 | 42.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 713 | 42.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 725 | 42.02 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 12 | 23 |
| 779 | 42.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 781 | 42.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 789 | 42.04 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 824 | 42.05 | radiation | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 830 | 42.05 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 891 | 42.07 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 921 | 42.08 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 923 | 42.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 966 | 42.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 998 | 42.12 | radiation | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |