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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0591100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NAD-dependent epimerase/dehydratase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.7 (0.0366) R2 : 0.215
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.683 (0.0899) R2dC : 0.1 R2C : 0.0871
β3 : -3.11 (0.421) R2dE : 0.0942 R2E : 0.0793
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.327 (0.0769) R2dN8 : 0.0404 R2N8 : 0.0231
σ : 0.685
deviance : 216.38
__
_____
C
peak time of C : 9.46
E
wheather : wind
threshold : 9.3
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.83 0.684 9.66 -0.119 0.686 -8.27 0.118 -20.3 -0.318 9.38 9.4 11 -- --
216.45 0.685 9.7 -0.0142 0.681 -3.17 0.0424 -- -0.325 9.44 9.366 10 -- --
211.39 0.677 9.67 -0.131 0.652 -8.69 -- -22 -0.343 9.31 9.457 11 -- --
216.38 0.685 9.7 -0.0145 0.683 -3.11 -- -- -0.329 9.45 9.3 10 -- --
237.91 0.718 9.67 -0.137 -- -8.9 -- -23.2 -0.325 -- 9.536 11 -- --
241.37 0.728 9.69 0.117 0.688 -- 0.00862 -- -0.279 8.95 -- -- -- --
241.37 0.728 9.69 0.117 0.688 -- -- -- -0.279 8.95 -- -- -- --
243.57 0.727 9.72 -0.0101 -- -3.18 -- -- -0.323 -- 9.4 10 -- --
216.38 0.685 9.7 -- 0.683 -3.11 -- -- -0.327 9.46 9.3 10 -- --
268.48 0.766 9.71 0.117 -- -- -- -- -0.275 -- -- -- -- --
241.73 0.727 9.69 -- 0.688 -- -- -- -0.292 8.94 -- -- -- --
243.58 0.727 9.72 -- -- -3.18 -- -- -0.321 -- 9.4 10 -- --
268.84 0.765 9.71 -- -- -- -- -- -0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.62 wind 3 43200 < th dose dependent rect. 5 2
2 206.85 humidity 70 14400 > th dose dependent rect. 9 1
3 206.99 humidity 60 14400 > th dose dependent rect. 9 3
4 207.05 humidity 80 14400 > th dose independent rect. 8 3
10 207.20 humidity 80 14400 < th dose independent rect. 8 3
14 207.48 humidity 80 14400 > th dose independent rect. 9 1
18 207.62 humidity 90 14400 > th dose dependent rect. 9 1
70 208.68 humidity 90 14400 < th dose dependent rect. 9 9
81 208.73 humidity 60 14400 > th dose independent rect. 12 4
92 208.79 humidity 90 14400 < th dose dependent rect. 9 6
103 208.89 wind 9 30 > th dose dependent rect. 17 21
109 208.92 humidity 80 14400 < th dose dependent rect. 11 6
123 209.00 wind 3 43200 < th dose independent rect. 5 3
149 209.12 humidity 50 14400 > th dose dependent sin 23 NA
150 209.12 wind 1 43200 > th dose dependent rect. 5 2
166 209.21 humidity 70 14400 > th dose independent rect. 11 1
177 209.25 wind 3 43200 > th dose independent rect. 5 3
222 209.42 humidity 60 14400 < th dose independent rect. 12 4
223 209.42 humidity 60 14400 > th dose independent rect. 12 20
241 209.52 humidity 60 14400 > th dose independent rect. 12 13
249 209.53 humidity 60 14400 > th dose independent rect. 12 10
258 209.55 humidity 60 14400 < th dose independent rect. 13 2
276 209.59 humidity 90 14400 < th dose dependent sin 23 NA
293 209.65 humidity 70 14400 < th dose independent rect. 17 2
294 209.65 humidity 60 14400 < th dose independent rect. 12 6
301 209.67 humidity 70 14400 < th dose independent rect. 17 15
313 209.70 wind 9 43200 < th dose independent rect. 12 1
369 209.84 humidity 70 14400 < th dose dependent rect. 16 16
373 209.86 humidity 80 14400 < th dose dependent rect. 16 1
390 209.91 humidity 60 14400 < th dose independent rect. 12 20
426 210.00 humidity 60 14400 < th dose independent rect. 12 9
475 210.07 humidity 50 14400 > th dose dependent rect. 16 1
497 210.11 humidity 70 14400 < th dose dependent rect. 16 6
547 210.22 humidity 70 14400 < th dose independent rect. 17 5
574 210.27 humidity 60 14400 > th dose independent sin 15 NA
625 210.36 wind 3 43200 < th dose dependent rect. 1 7
669 210.48 humidity 70 14400 < th dose dependent sin 13 NA
698 210.53 humidity 60 14400 < th dose independent sin 14 NA
758 210.67 humidity 70 14400 > th dose independent rect. 15 22
767 210.68 humidity 70 14400 > th dose independent rect. 17 15
780 210.69 humidity 70 14400 > th dose independent rect. 20 23
803 210.73 wind 3 43200 < th dose independent rect. 1 7
825 210.75 humidity 70 14400 > th dose independent rect. 23 20
833 210.76 humidity 70 14400 > th dose independent rect. 6 13
847 210.78 humidity 70 14400 > th dose independent rect. 17 2
887 210.84 humidity 70 14400 > th dose independent rect. 9 10
889 210.84 humidity 70 14400 < th dose independent rect. 15 22
972 210.95 humidity 70 14400 > th dose independent no NA NA
975 210.95 humidity 70 14400 > th dose independent rect. 6 19
991 210.95 humidity 70 14400 > th dose independent rect. 24 23