Os10g0417600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os10g0417600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.44 | 0.386 | 12.3 | -0.621 | 2.72 | 1.54 | -1.09 | -1.65 | -0.175 | 23.3 | 2.208 | 221 | 21 | -- |
| 72.55 | 0.397 | 12.3 | -0.58 | 2.7 | 1.5 | -1.16 | -- | -0.167 | 23.4 | 1.955 | 220 | 20.7 | -- |
| 72.21 | 0.396 | 12.3 | -0.605 | 2.7 | 1.48 | -- | -1.65 | -0.164 | 23.3 | 2.284 | 209 | 21.1 | -- |
| 77.83 | 0.411 | 12.3 | -0.553 | 2.68 | 1.45 | -- | -- | -0.162 | 23.4 | 1.91 | 209 | 20.8 | -- |
| 122.82 | 0.519 | 12.3 | -0.62 | -- | 2.69 | -- | -0.929 | -0.158 | -- | 21.8 | 43 | 5.47 | -- |
| 109.32 | 0.49 | 12.3 | -0.662 | 2.91 | -- | -1.01 | -- | -0.194 | 0.574 | -- | -- | -- | -- |
| 113.66 | 0.499 | 12.3 | -0.624 | 2.91 | -- | -- | -- | -0.188 | 0.559 | -- | -- | -- | -- |
| 113.56 | 0.496 | 12.3 | -0.624 | -- | 2.88 | -- | -- | -0.18 | -- | 256 | 25 | 5.62 | -- |
| 85.65 | 0.431 | 12.3 | -- | 2.69 | 1.52 | -- | -- | -0.12 | 23.3 | 1.29 | 215 | 20.7 | -- |
| 644.63 | 1.19 | 12.3 | -0.522 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 123.91 | 0.521 | 12.3 | -- | 2.9 | -- | -- | -- | -0.119 | 0.549 | -- | -- | -- | -- |
| 123.76 | 0.518 | 12.3 | -- | -- | 2.87 | -- | -- | -0.111 | -- | 341.4 | 17 | 5.57 | -- |
| 651.81 | 1.19 | 12.3 | -- | -- | -- | -- | -- | -0.0807 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.13 | radiation | 1 | 270 | < th | dose dependent | sin | 3 | NA |
| 3 | 69.65 | radiation | 1 | 270 | < th | dose independent | sin | 4 | NA |
| 4 | 70.07 | radiation | 1 | 270 | > th | dose independent | sin | 3 | NA |
| 8 | 71.17 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 22 |
| 10 | 71.92 | humidity | 70 | 10 | > th | dose dependent | sin | 3 | NA |
| 11 | 72.04 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 13 | 72.22 | radiation | 1 | 270 | < th | dose independent | rect. | 23 | 20 |
| 14 | 72.27 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 17 |
| 16 | 72.62 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 21 | 72.83 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 10 |
| 33 | 73.02 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 41 | 73.24 | radiation | 1 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 49 | 73.43 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 9 |
| 143 | 75.53 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 9 |
| 246 | 77.44 | humidity | 90 | 90 | < th | dose independent | sin | 2 | NA |
| 283 | 77.85 | humidity | 80 | 30 | > th | dose independent | rect. | 2 | 14 |
| 368 | 78.67 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 18 |
| 430 | 79.27 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 8 |
| 432 | 79.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 602 | 81.10 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 19 |
| 636 | 81.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 662 | 81.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 797 | 82.52 | humidity | 90 | 90 | > th | dose independent | sin | 2 | NA |
| 802 | 82.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 825 | 82.76 | humidity | 80 | 10 | < th | dose independent | rect. | 22 | 18 |
| 829 | 82.77 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 14 |
| 830 | 82.77 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 16 |
| 853 | 82.90 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 18 |