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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0504000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.038) R2 : 0.492
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.1 (0.0978) R2dC : 0.162 R2C : 0.273
β3 : 1.41 (0.133) R2dE : 0.153 R2E : 0.291
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.393 (0.0816) R2dN8 : 0.0349 R2N8 : 0.0525
σ : 0.704
deviance : 228.57
__
_____
C
peak time of C : 23
E
wheather : radiation
threshold : 0.8354
memory length : 773
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.17 0.702 4.39 -0.321 1.1 1.48 -0.337 1.52 -0.428 23 0.7492 777 17 1.13
227.45 0.702 4.39 -0.104 1.07 1.46 0.46 -- -0.407 22.9 0.83 766 17 1.13
223.37 0.696 4.39 -0.265 1.12 1.55 -- 1.54 -0.423 23 0.6 812 17 1.14
228.38 0.704 4.39 -0.0735 1.09 1.42 -- -- -0.404 22.9 0.83 773 17 1.13
252.83 0.741 4.39 -0.332 -- 2.19 -- 1.25 -0.529 -- 1.068 742 16.8 1.97
281.7 0.787 4.43 -0.306 1.49 -- 0.163 -- -0.626 23.2 -- -- -- --
281.82 0.786 4.43 -0.312 1.49 -- -- -- -0.627 23.2 -- -- -- --
250.48 0.737 4.4 -0.242 -- 1.91 -- -- -0.493 -- 33.94 839 15.4 2.22
228.57 0.704 4.39 -- 1.1 1.41 -- -- -0.393 23 0.8354 773 17 1.13
420.96 0.959 4.4 -0.276 -- -- -- -- -0.613 -- -- -- -- --
284.39 0.789 4.43 -- 1.49 -- -- -- -0.592 23.2 -- -- -- --
250.98 0.738 4.36 -- -- 1.84 -- -- -0.434 -- 34.28 845 15.7 1.53
422.97 0.96 4.39 -- -- -- -- -- -0.583 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.60 radiation 1.0 720 < th dose dependent rect. 17 1
3 240.08 temperature 25.0 720 < th dose independent rect. 17 3
4 240.42 temperature 25.0 720 < th dose independent rect. 18 1
15 243.82 radiation 1.0 720 < th dose dependent rect. 16 11
19 244.68 radiation 10.0 43200 < th dose dependent rect. 21 7
25 245.02 radiation 1.0 720 < th dose dependent rect. 8 10
27 245.19 radiation 1.0 720 < th dose independent rect. 16 3
34 246.54 radiation 1.0 720 < th dose independent rect. 16 11
41 247.48 temperature 25.0 720 > th dose independent rect. 20 1
52 248.48 radiation 10.0 43200 < th dose dependent rect. 23 4
57 248.57 temperature 30.0 10 < th dose dependent rect. 16 15
71 249.10 precipitation 0.1 720 < th dose independent rect. 9 23
73 249.10 precipitation 0.1 720 < th dose dependent rect. 9 23
79 249.37 temperature 25.0 10 < th dose dependent rect. 24 23
85 249.64 precipitation 0.1 720 < th dose independent rect. 9 16
86 249.64 precipitation 0.1 720 < th dose dependent rect. 9 16
91 249.91 temperature 20.0 270 > th dose dependent rect. 19 7
98 250.14 radiation 1.0 1440 < th dose dependent rect. 8 15
105 250.24 temperature 20.0 270 > th dose dependent rect. 19 9
112 250.31 radiation 1.0 1440 < th dose dependent rect. 8 21
135 250.45 temperature 15.0 30 > th dose dependent rect. 20 20
187 250.76 radiation 1.0 1440 < th dose dependent sin 18 NA
202 250.87 radiation 1.0 720 < th dose independent rect. 8 11
209 250.94 temperature 25.0 4320 < th dose independent rect. 19 1
212 251.00 temperature 25.0 30 < th dose dependent rect. 11 20
214 251.02 precipitation 0.1 720 < th dose independent sin 16 NA
215 251.02 precipitation 0.1 720 < th dose dependent sin 16 NA
217 251.04 precipitation 0.1 720 > th dose independent rect. 17 10
250 251.45 temperature 30.0 720 < th dose dependent rect. 17 3
255 251.49 precipitation 0.1 720 > th dose independent rect. 17 6
265 251.70 temperature 10.0 270 > th dose dependent rect. 18 21
273 251.77 precipitation 0.1 720 < th dose independent rect. 14 9
274 251.77 precipitation 0.1 720 < th dose dependent rect. 14 9
283 251.87 precipitation 0.1 720 > th dose dependent rect. 20 23
284 251.89 precipitation 0.1 720 < th dose independent rect. 11 15
286 251.89 precipitation 0.1 720 < th dose dependent rect. 11 15
289 251.91 temperature 25.0 4320 > th dose independent rect. 19 1
297 251.95 temperature 15.0 270 > th dose dependent rect. 19 13
325 252.29 precipitation 0.1 43200 > th dose dependent rect. 20 1
342 252.46 precipitation 0.1 720 > th dose independent rect. 15 12
346 252.47 precipitation 0.1 720 > th dose dependent rect. 17 7
373 252.70 precipitation 0.1 720 > th dose dependent rect. 17 10
376 252.71 temperature 20.0 30 > th dose dependent rect. 20 8
382 252.78 precipitation 0.1 720 > th dose independent rect. 15 9
384 252.81 temperature 20.0 720 > th dose dependent rect. 20 1
385 252.84 radiation 1.0 720 < th dose independent rect. 8 20
398 252.94 radiation 1.0 43200 < th dose dependent rect. 24 1
406 253.01 temperature 20.0 30 > th dose dependent rect. 20 10
418 253.10 precipitation 0.1 720 > th dose independent rect. 9 19
424 253.13 precipitation 0.1 720 < th dose independent rect. 13 18
425 253.13 precipitation 0.1 720 < th dose dependent rect. 13 18
439 253.29 humidity 90.0 720 > th dose independent rect. 17 1
446 253.33 precipitation 0.1 720 > th dose independent sin 16 NA
468 253.45 radiation 1.0 1440 > th dose independent rect. 14 4
477 253.49 precipitation 0.1 720 > th dose independent rect. 9 15
487 253.53 precipitation 0.1 270 > th dose independent rect. 21 22
489 253.54 radiation 1.0 1440 > th dose independent rect. 8 10
493 253.55 radiation 1.0 1440 < th dose independent rect. 8 13
501 253.59 radiation 1.0 1440 < th dose independent rect. 8 15
512 253.65 precipitation 0.1 720 > th dose independent rect. 6 18
514 253.67 precipitation 0.1 720 > th dose independent rect. 6 21
518 253.68 atmosphere 1010.0 4320 > th dose dependent rect. 7 1
543 253.77 precipitation 0.1 720 > th dose dependent rect. 15 12
548 253.79 precipitation 0.1 720 > th dose independent rect. 12 12
564 253.83 precipitation 0.1 720 < th dose independent sin 20 NA
566 253.83 precipitation 0.1 720 < th dose dependent sin 20 NA
573 253.86 precipitation 0.1 43200 > th dose independent rect. 20 1
608 253.94 precipitation 0.1 720 > th dose dependent rect. 9 19
657 254.05 temperature 25.0 30 < th dose independent rect. 15 16
671 254.08 precipitation 0.1 43200 < th dose independent rect. 20 1
677 254.08 precipitation 0.1 43200 < th dose dependent rect. 20 1
709 254.16 precipitation 0.1 720 > th dose dependent rect. 12 16
712 254.16 precipitation 0.1 720 > th dose dependent rect. 6 22
724 254.19 precipitation 0.1 720 > th dose dependent rect. 9 15
762 254.29 precipitation 0.1 720 > th dose dependent rect. 6 18
788 254.37 radiation 1.0 1440 < th dose independent sin 18 NA
791 254.38 precipitation 0.1 270 > th dose independent rect. 1 18
824 254.46 precipitation 0.1 720 > th dose dependent sin 17 NA
914 254.78 precipitation 0.1 720 > th dose dependent rect. 17 21
930 254.83 precipitation 0.1 720 > th dose dependent rect. 17 23
949 254.89 humidity 80.0 43200 > th dose dependent rect. 18 5
976 254.98 radiation 1.0 720 > th dose independent rect. 11 19
991 255.03 temperature 25.0 30 < th dose dependent rect. 15 21