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Os06g0652300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase (GER1); 21556- 22494.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.1 (0.0606) R2 : 0.731
β1 : 2 (0.223) R2dD : 0.0506 R2D : -0.0244
β2 : 7.47 (0.239) R2dC : 1.34 R2C : 0.123
β3 : -5.54 (0.292) R2dE : 0.497 R2E : -0.756
β4 : 5.12 (1) R2dD*C : 0.0298 R2D*C : -0.0523
β5 : -6.23 (0.991) R2dD*E : 0.046 R2D*E : -0.0347
γ1 : 1.16 (0.129) R2dN8 : 0.0644 R2N8 : 0.038
σ : 1.14
deviance : 585.93
__
_____
C
peak time of C : 6.11
E
wheather : humidity
threshold : 68.53
memory length : 747
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 6.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
585.93 1.14 9.1 2 7.47 -5.54 5.12 -6.23 1.16 6.11 68.53 747 18.9 6.01
633.87 1.17 9.13 1.92 7.37 -5.47 0.632 -- 1.09 6.13 68.46 767 18.8 5.7
613.13 1.15 9.09 2.07 7.12 -5.06 -- -2.76 1.21 6.19 68.17 776 18.6 5.87
627.74 1.17 9.06 1.83 7.77 -6.04 -- -- 1.17 6 64.26 779 18.1 6.52
1348.9 1.71 9.28 2.37 -- -4.58 -- -2.64 1.46 -- 38.86 1538 18.7 6.01
934.72 1.43 9.11 1.52 4.43 -- 2.22 -- 1.2 7.79 -- -- -- --
948.64 1.44 9.11 1.58 4.44 -- -- -- 1.19 7.72 -- -- -- --
798.1 1.32 9.25 2.52 -- -5.27 -- -- 1.48 -- -59.1 1693 12.2 11.3
714.07 1.24 9.12 -- 7.61 -5.9 -- -- 0.994 5.9 63.8 777 18.1 6.38
2011.12 2.1 9.22 1.63 -- -- -- -- 1.26 -- -- -- -- --
1014.12 1.49 9.15 -- 4.45 -- -- -- 1.02 7.7 -- -- -- --
779.7 1.3 9.25 -- -- -6.78 -- -- 1.11 -- -15.38 1816 11.4 10.4
2081.46 2.13 9.26 -- -- -- -- -- 1.08 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 599.25 humidity 70.0 720 > th dose dependent rect. 19 6
3 602.25 humidity 80.0 43200 > th dose independent rect. 13 1
8 609.47 humidity 70.0 14400 > th dose independent rect. 19 12
9 609.54 humidity 70.0 14400 > th dose independent rect. 19 1
12 610.70 humidity 70.0 14400 > th dose independent rect. 19 8
30 614.10 humidity 80.0 43200 < th dose independent rect. 13 1
39 617.74 radiation 1.0 1440 < th dose dependent rect. 18 23
42 619.04 radiation 1.0 1440 < th dose dependent rect. 5 12
44 619.17 humidity 90.0 43200 > th dose dependent rect. 20 1
54 621.38 humidity 80.0 720 > th dose dependent rect. 19 4
64 623.84 humidity 80.0 43200 > th dose dependent rect. 10 5
69 624.60 precipitation 0.1 43200 > th dose independent rect. 19 1
71 624.91 humidity 90.0 720 < th dose dependent rect. 19 4
72 625.09 precipitation 0.1 43200 < th dose independent rect. 19 1
73 625.09 precipitation 0.1 43200 < th dose dependent rect. 19 1
75 625.32 radiation 1.0 1440 < th dose dependent rect. 22 19
76 625.42 radiation 1.0 1440 < th dose dependent sin 1 NA
77 625.47 radiation 1.0 1440 < th dose dependent rect. 5 22
87 626.00 radiation 1.0 1440 < th dose dependent rect. 5 15
91 626.16 humidity 70.0 720 > th dose dependent sin 15 NA
106 627.43 humidity 70.0 14400 < th dose independent rect. 18 13
110 627.80 radiation 1.0 1440 < th dose dependent rect. 9 22
112 627.87 radiation 1.0 1440 > th dose independent rect. 9 22
116 628.27 humidity 70.0 14400 < th dose independent rect. 18 4
127 628.56 radiation 1.0 1440 > th dose independent rect. 11 20
141 629.89 radiation 1.0 1440 < th dose independent rect. 9 22
146 630.25 radiation 1.0 1440 < th dose dependent rect. 22 22
157 630.40 radiation 1.0 1440 < th dose dependent no NA NA
160 630.43 radiation 1.0 1440 < th dose dependent rect. 2 23
171 630.58 radiation 1.0 1440 < th dose dependent rect. 11 23
203 631.15 radiation 1.0 1440 > th dose independent rect. 18 23
206 631.29 radiation 1.0 1440 < th dose independent rect. 18 23
207 631.44 humidity 80.0 43200 > th dose dependent rect. 10 1
235 633.65 radiation 1.0 1440 > th dose independent sin 0 NA
237 633.68 precipitation 0.1 43200 > th dose dependent rect. 19 1
256 634.22 temperature 25.0 14400 > th dose dependent rect. 20 18
267 634.53 radiation 1.0 1440 > th dose independent rect. 5 14
287 634.85 radiation 1.0 1440 > th dose independent rect. 11 23
293 635.13 radiation 1.0 1440 > th dose independent no NA NA
343 635.25 radiation 20.0 14400 > th dose dependent rect. 16 1
362 635.52 temperature 25.0 14400 > th dose dependent rect. 11 1
373 635.80 radiation 1.0 1440 < th dose independent rect. 5 22
379 635.84 radiation 1.0 1440 < th dose dependent rect. 15 23
383 635.87 temperature 25.0 14400 > th dose dependent sin 7 NA
392 636.17 radiation 1.0 1440 < th dose independent rect. 5 15
406 636.35 temperature 25.0 14400 > th dose independent rect. 23 11
414 636.56 radiation 1.0 1440 < th dose independent sin 0 NA
431 637.05 temperature 25.0 14400 > th dose independent rect. 1 8
432 637.05 radiation 1.0 1440 < th dose independent rect. 11 23
434 637.06 radiation 1.0 1440 < th dose independent rect. 22 22
446 637.17 radiation 1.0 1440 < th dose independent no NA NA
449 637.19 radiation 1.0 1440 < th dose independent rect. 2 23
512 637.73 temperature 25.0 14400 > th dose dependent rect. 9 19
513 637.74 temperature 25.0 14400 > th dose dependent rect. 11 20
514 637.74 temperature 25.0 14400 > th dose dependent rect. 9 21
518 637.77 temperature 25.0 14400 > th dose dependent rect. 11 17
541 637.87 temperature 25.0 14400 > th dose dependent rect. 11 23
543 637.88 temperature 25.0 14400 > th dose dependent rect. 15 23
558 637.99 temperature 25.0 14400 > th dose dependent rect. 5 23
559 638.00 temperature 25.0 14400 > th dose dependent no NA NA
565 638.02 temperature 25.0 14400 > th dose dependent sin 13 NA
567 638.05 temperature 25.0 14400 > th dose dependent rect. 9 4
586 638.15 humidity 70.0 720 > th dose dependent rect. 11 15
611 638.37 temperature 25.0 14400 > th dose dependent rect. 22 3
645 638.64 humidity 90.0 43200 > th dose independent rect. 20 2
666 638.86 temperature 25.0 14400 < th dose independent rect. 23 10
691 639.13 wind 9.0 43200 > th dose independent rect. 16 1
702 639.19 temperature 25.0 14400 < th dose independent rect. 1 8
704 639.22 humidity 70.0 43200 > th dose dependent rect. 14 1
803 640.04 humidity 80.0 720 > th dose independent rect. 15 10
851 640.67 humidity 90.0 43200 > th dose independent rect. 18 4
877 640.92 temperature 25.0 14400 > th dose independent sin 9 NA
881 640.95 wind 3.0 43200 < th dose dependent rect. 3 1
889 641.07 wind 5.0 43200 < th dose independent rect. 11 1
917 641.45 temperature 25.0 14400 > th dose independent rect. 23 1
934 641.71 wind 9.0 43200 < th dose independent rect. 16 1
983 642.24 temperature 25.0 14400 > th dose dependent rect. 15 1
991 642.32 temperature 25.0 14400 > th dose dependent rect. 20 7