BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0652300 Os06g0652300|Os06g0652300
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0652300 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-e... 631 0.0
Os06g0652400 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-e... 405 e-113
AK109046 106 3e-23
Os11g0591100 NAD-dependent epimerase/dehydratase family pro... 95 6e-20
Os10g0417600 NAD-dependent epimerase/dehydratase family pro... 95 8e-20
Os03g0278200 NAD-dependent epimerase/dehydratase family pro... 70 2e-12
Os03g0278000 UDP-glucuronic acid decarboxylase 68 8e-12
>Os06g0652300 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
(GER1)
Length = 347
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/347 (91%), Positives = 317/347 (91%)
Query: 1 MPSQQRXXXXXXXXXXXXXXXXXXXXVSFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFT 60
MPSQQR VSFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFT
Sbjct: 1 MPSQQRSSSGSTAKAGDADGDGDAAAVSFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFT 60
Query: 61 NVVVRTRAELDLACQXXXXXXXXXXLPRYVILAAAKVGGVHASSAAPAEYLTENLRITVN 120
NVVVRTRAELDLACQ LPRYVILAAAKVGGVHASSAAPAEYLTENLRITVN
Sbjct: 61 NVVVRTRAELDLACQAAVEAFFAAELPRYVILAAAKVGGVHASSAAPAEYLTENLRITVN 120
Query: 121 VVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSEWYAIPKIAGIKMCQ 180
VVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSEWYAIPKIAGIKMCQ
Sbjct: 121 VVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSEWYAIPKIAGIKMCQ 180
Query: 181 AVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAA 240
AVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAA
Sbjct: 181 AVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAA 240
Query: 241 REFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARP 300
REFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARP
Sbjct: 241 REFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARP 300
Query: 301 EGVARRVVDSGRMRKLGWEPRVALRDGIQDLYRFYLRHECGGQAHHA 347
EGVARRVVDSGRMRKLGWEPRVALRDGIQDLYRFYLRHECGGQAHHA
Sbjct: 301 EGVARRVVDSGRMRKLGWEPRVALRDGIQDLYRFYLRHECGGQAHHA 347
>Os06g0652400 Similar to GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
(GER1)
Length = 328
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/311 (59%), Positives = 242/311 (77%)
Query: 28 SFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFTNVVVRTRAELDLACQXXXXXXXXXXLP 87
SFL DK KVF+AGHRG+VGSA+ R L +LGFTNVVVRT AELDL Q LP
Sbjct: 12 SFLADKGGKVFVAGHRGLVGSAILRHLVSLGFTNVVVRTHAELDLTRQSDVEAFFAAELP 71
Query: 88 RYVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADA 147
RYV+LAAAKVGG+HA+S PA+++ NL+I NVVDAA +CGSVRKLL L SS IYP A
Sbjct: 72 RYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALKCGSVRKLLFLGSSCIYPKFA 131
Query: 148 PQPTPESALLTGPPAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPP 207
PQP PE++LL+GP +EWYA+ KIAGIKMCQA R ++G DAI+A P NLYGP+ F P
Sbjct: 132 PQPIPENSLLSGPLEPTNEWYAVAKIAGIKMCQAYRIQHGFDAISAMPTNLYGPQDNFHP 191
Query: 208 EHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVN 267
E+SHV+PALIRRFH AK A EV VWG+G+ REF HVDDLA+AV+ LM+ YSG EHVN
Sbjct: 192 ENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVN 251
Query: 268 VGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMRKLGWEPRVALRDG 327
VGSG EVT++ELAE V+ VVG++G + WD+++P+G R+++DS +++++GW+P+V L++G
Sbjct: 252 VGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQEMGWKPKVPLKEG 311
Query: 328 IQDLYRFYLRH 338
+ + Y++Y+ +
Sbjct: 312 LVETYKWYVEN 322
>AK109046
Length = 350
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 139/318 (43%), Gaps = 31/318 (9%)
Query: 36 KVFIAGHRGMVGSAVHRKLDALG-FTNVVVRTRAEL-----------DLACQXXXXXXXX 83
++F+AG G +GS ++L G F V R D+ +
Sbjct: 8 RIFVAGGGGFIGSHTAKRLKEEGHFVRVADWKRQHYFEDSQICDEFHDVDLRDLNNCIKM 67
Query: 84 XXLPRYVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIY 143
V AA +GG+ + + L N+ I+ N+V+AARR GSV++ +S+ IY
Sbjct: 68 CEGMDEVYDFAADMGGMGFIQSNHSVILYNNIMISFNMVEAARRSGSVKRFFYSSSACIY 127
Query: 144 PADAPQPTPESALLTGP--PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGP 201
P T L PA+ + Y + K+ + C+ ++G++ +N+YGP
Sbjct: 128 PEYRQLETANPGLKESDAWPAQPQDAYGLEKLVTEEFCKYYNKDFGIEFRIGRFHNIYGP 187
Query: 202 RHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYS 261
+ A F R L +WG G R F ++DD E V+ LM R
Sbjct: 188 HGTWKGGREKAPAA----FCRKALVCGDVFEMWGDGEQTRSFCYIDDCVEGVLRLM-RSD 242
Query: 262 GEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAAR------PEGVARRVVDSGRMR- 314
E +N+GS E V++ ++A V G + D+ + PEGV R D+ +R
Sbjct: 243 VREPINIGSEEMVSMNDMAHLVLDFAGKK-----DSTKLHHIPGPEGVRGRNSDNTLIRE 297
Query: 315 KLGWEPRVALRDGIQDLY 332
KLGW P + L+DG++ +
Sbjct: 298 KLGWAPIINLKDGLKRTF 315
>Os11g0591100 NAD-dependent epimerase/dehydratase family protein
Length = 371
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 10/253 (3%)
Query: 89 YVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAP 148
+V AA +GG+ + + + N I+ N+++AAR G V++ +S+ IYP
Sbjct: 89 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQ 147
Query: 149 QPTPESALLTGP-PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPP 207
T S + PAE + Y + K+A ++C+ ++G++ +N+YGP +
Sbjct: 148 LDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG 207
Query: 208 EHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVN 267
A F R L +WG G R FT +D+ E V+ L + E VN
Sbjct: 208 GREKAPAA----FCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT-KSDFREPVN 262
Query: 268 VGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMR-KLGWEPRVALRD 326
+GS E V++ E+AE V + + PEGV R D+ ++ KLGW P + L+D
Sbjct: 263 IGSDEMVSMNEMAEIVLSFENKQLPIH-HIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKD 321
Query: 327 GIQDLYRFYLRHE 339
G++ Y F+++ +
Sbjct: 322 GLRITY-FWIKEQ 333
>Os10g0417600 NAD-dependent epimerase/dehydratase family protein
Length = 378
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 10/253 (3%)
Query: 89 YVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAP 148
+V AA +GG+ + + + N I+ N+++AAR G V++ +S+ IYP
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQ 154
Query: 149 QPTPESALLTGP-PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPP 207
T S + PAE + Y + K+A ++C+ ++G++ +N+YGP +
Sbjct: 155 LETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG 214
Query: 208 EHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVN 267
A R+ + +WG G R FT +D+ E V+ L + E VN
Sbjct: 215 GREKAPAAFCRKAQTS----TDRFEMWGDGLQTRSFTFIDECVEGVLRLT-KSDFREPVN 269
Query: 268 VGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMR-KLGWEPRVALRD 326
+GS E V++ E+AE + E + PEGV R D+ ++ KLGW P + L+D
Sbjct: 270 IGSDEMVSMNEMAEIILSFEDRELPIH-HIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKD 328
Query: 327 GIQDLYRFYLRHE 339
G++ Y F+++ +
Sbjct: 329 GLRFTY-FWIKEQ 340
>Os03g0278200 NAD-dependent epimerase/dehydratase family protein
Length = 675
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 21/255 (8%)
Query: 90 VILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIY---PAD 146
I+ A V S E+ N+ T +++A + G +R+ + +++ +Y D
Sbjct: 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDED 142
Query: 147 APQPTPE-SALLTGPPAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPF 205
A E S LL P Y+ K + A YGL I NN+YGP F
Sbjct: 143 AVVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ-F 195
Query: 206 PPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEH 265
P + LI +F + G + + G G+ R + + +D+AEA V++ +
Sbjct: 196 PEK-------LIPKFILLAMRGL-PLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHV 247
Query: 266 VNVGSGEEVTVRELAEAVRGVVGY--EGVVAWDAARPEGVARRVVDSGRMRKLGWEPRVA 323
N+G+ +E V ++A+ + + G E V+ + RP R +D +++KLGW R
Sbjct: 248 YNIGTVKERRVIDVAKDICKLFGLDTEKVIRFVENRPFNDQRYFLDDQKLKKLGWAERTL 307
Query: 324 LRDGIQDLYRFYLRH 338
+G++ +Y +
Sbjct: 308 WEEGLKKTIEWYTNN 322
>Os03g0278000 UDP-glucuronic acid decarboxylase
Length = 350
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 107 PAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGPPAEGSE 166
P + + N+ T+N++ A+R G+ ++L+ ++S +Y P E+ P
Sbjct: 119 PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRS 176
Query: 167 WYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLE 226
Y K + ++G++ A N YGPR + V+ I + R +
Sbjct: 177 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI--DDGRVVSNFIAQAVRGE-- 232
Query: 227 GAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEH--VNVGSGEEVTVRELAEAVR 284
+ V G R F +V D+ ++ LM +G+ +N+G+ E T+ ELAE V+
Sbjct: 233 ---PLTVQKPGTQTRSFCYVADMVNGLIKLM---NGDNTGPINLGNPGEFTMLELAENVK 286
Query: 285 GVVGYEGVVAWDAARPEGVARRVVDSGRMRK-LGWEPRVALRDGI---QDLYRFYLRHEC 340
++ E V P+ +R D + ++ LGWEP++ LRDG+ +D +R L+
Sbjct: 287 ELINPEVTVTMTENTPDDPRQRKPDITKAKEVLGWEPKIVLRDGLVLMEDDFRERLQVPK 346
Query: 341 GGQA 344
QA
Sbjct: 347 KNQA 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,870,330
Number of extensions: 531297
Number of successful extensions: 1965
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)