BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0254600 Os08g0254600|J100043L21
(230 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0254600 Cyclic nucleotide-binding domain containing pr... 481 e-136
Os09g0558300 Similar to Cyclic nucleotide-gated channel A (... 250 5e-67
Os06g0188000 Similar to Cyclic nucleotide-gated channel C (... 249 1e-66
Os02g0789100 Cyclic nucleotide-binding domain containing pr... 244 3e-65
Os12g0163000 Similar to Cyclic nucleotide-gated channel A (... 226 1e-59
Os02g0255000 Similar to Cyclic nucleotide-gated ion channel... 221 3e-58
Os06g0527100 Similar to Cyclic nucleotide-gated channel A (... 216 9e-57
Os03g0646300 Similar to Cyclic nucleotide-gated channel A (... 216 1e-56
Os04g0643600 Similar to Cyclic nucleotide-gated channel C (... 208 3e-54
Os02g0627700 Similar to Cyclic nucleotide-gated channel A (... 195 3e-50
Os01g0782700 Similar to Cyclic nucleotide-gated ion channel... 129 2e-30
Os05g0502000 Similar to Cyclic nucleotide-gated ion channel... 125 2e-29
Os03g0758300 Similar to Cyclic nucleotide-gated ion channel... 120 6e-28
Os02g0773400 Ion transport domain containing protein 114 7e-26
>Os08g0254600 Cyclic nucleotide-binding domain containing protein
Length = 230
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 FQVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRT 60
FQVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRT
Sbjct: 1 FQVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRT 60
Query: 61 GFFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVAST 120
GFFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVAST
Sbjct: 61 GFFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVAST 120
Query: 121 FRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDF 180
FRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDF
Sbjct: 121 FRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDF 180
Query: 181 NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKERPEEPDFSEDHHPE 230
NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKERPEEPDFSEDHHPE
Sbjct: 181 NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKERPEEPDFSEDHHPE 230
>Os09g0558300 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 713
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 172/237 (72%), Gaps = 14/237 (5%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VPFFS MD+QLLDAICER+ FL E TYI+REGDPV MLF+IRGKLESSTT+GGR+
Sbjct: 478 RVPFFSEMDYQLLDAICERLVSFLCPERTYISREGDPVNEMLFVIRGKLESSTTNGGRSN 537
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFNSIIL+PGDF GEELLTWALLP + +P STRTV+++ E+EAF+L+A+D+K VA+ F
Sbjct: 538 FFNSIILRPGDFAGEELLTWALLPKTNVHFPLSTRTVQSLTEVEAFALRAEDLKFVANQF 597
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDF- 180
R +HSK LQHTFR +S+ WRTWAA FIQ+AWR+ Q R+K+AE LS RW+S+ +
Sbjct: 598 RRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRQHQ-RRKLAE-SLS-RWESYSWWPEEHP 654
Query: 181 --NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQK--------ERPEEPDFSEDH 227
+ + E + S+ T++ + K AS ++ + ++P+EPDFS DH
Sbjct: 655 PADKPKQEGTSSSTKTIAESAIAQMHKFASASRRFRADDTAIRRLQKPDEPDFSADH 711
>Os06g0188000 Similar to Cyclic nucleotide-gated channel C (Fragment)
Length = 245
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 161/227 (70%), Gaps = 13/227 (5%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VPFFS MD QLLDAICER+ L T GTYI REGDPV MLFIIRGKLESSTTDGGRTG
Sbjct: 29 RVPFFSQMDGQLLDAICERLVSSLSTVGTYIVREGDPVTEMLFIIRGKLESSTTDGGRTG 88
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFNSI LK GDFCGEELL WAL+P + PSSTRTVKTI E+EAF+L+A+D+K VAS F
Sbjct: 89 FFNSITLKTGDFCGEELLGWALVPKPTVNLPSSTRTVKTIVEVEAFALRAEDLKFVASQF 148
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDFN 181
R +HS+ LQHTFR +S+ WRTWAA FIQ+AWRR + R+ ++ + +SFFS F
Sbjct: 149 RRLHSRKLQHTFRYYSHHWRTWAACFIQAAWRRYKRRRLAKDLSIR---ESFFSR-RSFE 204
Query: 182 DTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKER-PEEPDFSEDH 227
D D + S V + V K A I K+ K R P EPDFS +H
Sbjct: 205 D----DGSPEHSLVLN----AVRKGAHIIKELPKFRKPSEPDFSAEH 243
>Os02g0789100 Cyclic nucleotide-binding domain containing protein
Length = 480
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 163/226 (72%), Gaps = 6/226 (2%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
VPFFS MD+QLLDAICER+ L T+GTYI REGDPV MLFIIRGKLESSTT+GGRTG
Sbjct: 257 HVPFFSQMDNQLLDAICERLVSSLCTQGTYIVREGDPVTEMLFIIRGKLESSTTNGGRTG 316
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFNS LK GDFCGEELL WAL+P + PSSTRTVK + E+EAF+LQA+D+K VA+ F
Sbjct: 317 FFNSTTLKSGDFCGEELLGWALVPKPTVNLPSSTRTVKALIEVEAFALQAEDLKFVANQF 376
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDFN 181
R +HSK LQHTFR +S+ WRTWA+ FIQ+AWRR + R+KMA LS R +SF S+ +D
Sbjct: 377 RRLHSKRLQHTFRYYSHHWRTWASCFIQAAWRRYK-RRKMAR-DLSMR-ESFCSMRSD-- 431
Query: 182 DTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKER-PEEPDFSED 226
D+ ED + ++ + K K+ K R P+EPDFS +
Sbjct: 432 DSNGEDDSPPKQNLAMKIMSGSRKGPQNMKELPKLRKPDEPDFSAE 477
>Os12g0163000 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 648
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 131/163 (80%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VPFFS MD QLLDAICER+ L T+ YI REGDPV MLF+IRG+LESSTTDGGRT
Sbjct: 383 RVPFFSQMDEQLLDAICERLVSSLSTKDAYIVREGDPVSEMLFVIRGELESSTTDGGRTN 442
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FF+SI L+PGDFCGEELLTWAL+P+ ++P STRTV+++ E+EAF+L+A+D+K VA+ F
Sbjct: 443 FFSSITLRPGDFCGEELLTWALMPNPSLNFPQSTRTVRSVTEVEAFALRAEDLKYVANQF 502
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEV 164
+ +HSK LQH FR +S+QWR+W A F+Q AWRR + R+ E+
Sbjct: 503 KRLHSKRLQHAFRYYSHQWRSWGACFVQGAWRRYKKRKLAREL 545
>Os02g0255000 Similar to Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic
nucleotide-and calmodulin-regulated ion channel 1)
Length = 299
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 125/154 (81%)
Query: 1 FQVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRT 60
+VP F MD +LLDA+C+R+ L TEG+ I REGDPV MLFI+RG LES TT+GG+T
Sbjct: 66 MRVPMFENMDEKLLDAMCDRLKPMLYTEGSCIIREGDPVNEMLFIMRGNLESMTTNGGQT 125
Query: 61 GFFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVAST 120
GFFNS I+K GDFCGEELLTWAL P+S + PSSTRTVKT++E+EAF+L+ADD+K VA+
Sbjct: 126 GFFNSNIIKGGDFCGEELLTWALDPTSASNLPSSTRTVKTLSEVEAFALRADDLKFVATQ 185
Query: 121 FRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRR 154
FR +HSK LQHTFR +S QWRTWAA FIQ+AW R
Sbjct: 186 FRRLHSKQLQHTFRFYSQQWRTWAACFIQAAWHR 219
>Os06g0527100 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 694
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 155/246 (63%), Gaps = 30/246 (12%)
Query: 1 FQVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRT 60
+VP F MD QLL+A+C+R+ L TEG+ I RE DPV MLFI+RG L S TT+GGRT
Sbjct: 461 MRVPMFENMDDQLLNALCDRLKPVLYTEGSCIIREEDPVNEMLFIMRGNLMSMTTNGGRT 520
Query: 61 GFFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVAST 120
GFFNS +LK GDFCGEELLTWAL P+S S PSSTRTVKT++E+EAF+L+A+D+K VA+
Sbjct: 521 GFFNSDVLKGGDFCGEELLTWALDPTSVSSLPSSTRTVKTMSEVEAFALRAEDLKFVATQ 580
Query: 121 FRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEVGLSNRWKSFFSLVNDF 180
FR +HSK LQHTF+ +S WRTWAA FIQ+AW R R+K+ + + F++VND
Sbjct: 581 FRRLHSKQLQHTFKFYSQHWRTWAACFIQAAW-HRYCRKKIEDSLREKEKRLQFAIVND- 638
Query: 181 NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQK------------------ERPEEPD 222
++T+S R + S+ A + + ++P EP+
Sbjct: 639 ----------GATTLSFRAAIYASRFAGNMMRILRRNATRKARLKESVPARLLQKPAEPN 688
Query: 223 FSEDHH 228
F+ +
Sbjct: 689 FAAEEQ 694
>Os03g0646300 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 696
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 146/227 (64%), Gaps = 17/227 (7%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VP F+ MD +LLDAICER+ L TE T+I REGDPV MLFIIRG LES TTDGGR+G
Sbjct: 486 RVPLFANMDERLLDAICERLRPALYTERTFIIREGDPVDQMLFIIRGCLESITTDGGRSG 545
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFN +L+ DFCGEELLTWAL P + S PSSTRTV+ ++E+EAF+L +D++K VA F
Sbjct: 546 FFNRSLLEESDFCGEELLTWALDPKAGLSLPSSTRTVRALSEVEAFALHSDELKFVAGQF 605
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKM-AEVGLSNRWKSFFSLVNDF 180
R MHSK +QHTFR +S QWRTWAA +IQ+AWRR R+ + + GL LV+ F
Sbjct: 606 RRMHSKQVQHTFRFYSQQWRTWAATYIQAAWRRHLKRRAIRSSTGLKTT-----MLVSRF 660
Query: 181 NDTRCEDINGSSSTVSHRETVTVSKIASIFKKAQKERPEEPDFSEDH 227
+ HR+ S+ A +P EPDF D+
Sbjct: 661 AANAMRGV--------HRQR---SRRADEVLMMPMPKPSEPDFGADY 696
>Os04g0643600 Similar to Cyclic nucleotide-gated channel C (Fragment)
Length = 252
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VP F MD +LLDAICER+ L TE YI REGDPV M FI+ G LES TTDGGR+G
Sbjct: 26 RVPLFENMDERLLDAICERLRPTLYTENEYILREGDPVDEMHFILHGCLESETTDGGRSG 85
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFN + LK G FCG+ELLTWAL P S ++P+STRTVK + E+EAF+L A+++K VAS F
Sbjct: 86 FFNKVQLKEGAFCGDELLTWALDPKSAANFPASTRTVKALTEVEAFALCAEELKFVASQF 145
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAE 163
R +HS+ +QHTFR +S WRTWAA FIQ+AWRR R KMAE
Sbjct: 146 RRLHSRQVQHTFRFYSQHWRTWAACFIQAAWRRYYKR-KMAE 186
>Os02g0627700 Similar to Cyclic nucleotide-gated channel A (Fragment)
Length = 686
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 119/163 (73%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+VP F MD ++L+AICER+ L T GT + RE DPV MLFIIRG L+S TT GGR+G
Sbjct: 483 RVPLFDEMDERMLEAICERLRPALYTRGTRLVRELDPVDSMLFIIRGYLDSYTTQGGRSG 542
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
FFNS + G+FCGEELL WAL P S P STRTV+ ++E+EAF+L ADD++ VAS F
Sbjct: 543 FFNSCRIGAGEFCGEELLPWALDPRPAASLPLSTRTVRAVSEVEAFALVADDLRFVASQF 602
Query: 122 RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEV 164
R +HS ++H FR +S+QWRTWAA FIQ+AWRR + R+ E+
Sbjct: 603 RRLHSARIRHRFRFYSHQWRTWAACFIQAAWRRNKRRRASMEL 645
>Os01g0782700 Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic
nucleotide-and calmodulin-regulated ion channel 4)
(AtHLM1)
Length = 666
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
QVP F MD +L+ IC+R+ + +G I REGDPV+ MLFI+RG L+SS RTG
Sbjct: 465 QVPLFQHMDDLVLENICDRVKSLVFPKGEIIVREGDPVQRMLFIVRGHLQSSQVL--RTG 522
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
+ L PG+F G+ELL+W + + P+S+ T+ T+ EAF L+A D+K V F
Sbjct: 523 ATSCCTLGPGNFSGDELLSWCMRRPFLERLPASSSTLVTMESTEAFGLEAADVKYVTQHF 582
Query: 122 RMMHSK-HLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEV 164
R + ++ + R +S+ WRTWAA +Q AWRR ++R+ +A +
Sbjct: 583 RYTFTNDRVRRSARYYSHGWRTWAAVAVQLAWRRYKHRKTLASL 626
>Os05g0502000 Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic
nucleotide-and calmodulin-regulated ion channel 4)
(AtHLM1)
Length = 691
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 3/164 (1%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
QVP F MD +L+ IC+R+ + +G I REGDPV+ MLFI+RG L+ S R G
Sbjct: 492 QVPLFHHMDDLVLENICDRVKSLIFPKGEIIVREGDPVQRMLFIVRGHLQCSQVM--RNG 549
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
+ L PG+F G+ELL+W + + P+S+ T+ T EAF L+A D+K V F
Sbjct: 550 ATSWCTLGPGNFSGDELLSWCMRRPFMERLPASSSTLVTAESTEAFGLEAGDVKYVTQHF 609
Query: 122 RM-MHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMAEV 164
R S ++ + R +S+ WRTWAA +Q AWRR ++R+ +A +
Sbjct: 610 RYTFTSDKVRRSARYYSHGWRTWAAVAVQLAWRRYKHRKTLASL 653
>Os03g0758300 Similar to Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic
nucleotide-and calmodulin-regulated ion channel 2)
(DEFENSE NO DEATH 1)
Length = 618
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
QVP F MD +LD IC+R+ + + G + REGDPV+ M+F+++GKL S T G
Sbjct: 422 QVPLFHGMDDLILDNICDRLRPLVFSSGEKVIREGDPVQRMVFVLQGKLRS--TQPLAKG 479
Query: 62 FFNSIILKPGDFCGEELLTWALLPSSRDSYPSSTRTVKTIAELEAFSLQADDIKCVASTF 121
+ +L G+F G+ELL+W L S D P+S+ T + + +AF L A D++ + F
Sbjct: 480 VVATCMLGAGNFLGDELLSWCLRRPSLDRLPASSATFECVETAQAFCLDAPDLRFITEQF 539
Query: 122 RM-MHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNR 158
R ++ L+ T R +S WRTWAA IQ AWRR + R
Sbjct: 540 RYKFANEKLKRTARYYSSNWRTWAAVNIQLAWRRYKAR 577
>Os02g0773400 Ion transport domain containing protein
Length = 772
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 95/172 (55%), Gaps = 17/172 (9%)
Query: 2 QVPFFSAMDHQLLDAICERMTYFLRTEGTYITREGDPVKVMLFIIRGKLESSTTDGGRTG 61
+V F+ MD +LDAIC+++ L G+ I +G PV+ M+FI+RGKLES + DG +
Sbjct: 578 KVRLFTLMDWPILDAICDKLRQNLYISGSDILYQGGPVEKMVFIVRGKLESISADGSKAP 637
Query: 62 FFNSIILKPGDFCGEELLTWALLPSS--RDS--------YPSSTRTVKTIAELEAFSLQA 111
L GD CGEELLTW L SS RD + RTV+ + +EAF L+A
Sbjct: 638 ------LHEGDVCGEELLTWYLEHSSANRDGGRMRFHGMRLVAIRTVRCLTNVEAFVLRA 691
Query: 112 DDIKCVASTF-RMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRRRQNRQKMA 162
D++ V S F R + + +Q R S WRT AA IQ AWR R R K A
Sbjct: 692 SDLEEVTSQFSRFLRNPRVQGAIRYESPYWRTIAATRIQVAWRYRNRRLKRA 743
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,847,539
Number of extensions: 295407
Number of successful extensions: 731
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 14
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)