Os06g0527100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated channel A (Fragment).
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Os06g0527100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated channel A (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.26 | 0.206 | 12.1 | 1.2 | 0.226 | 0.352 | 0.217 | -0.708 | 0.467 | 19 | 87.74 | 242 | -- | -- |
| 20.24 | 0.21 | 12.1 | 1.2 | 0.21 | 0.321 | 0.44 | -- | 0.458 | 18.3 | 86.65 | 200 | -- | -- |
| 19.35 | 0.205 | 12.1 | 1.2 | 0.229 | 0.346 | -- | -0.768 | 0.467 | 19 | 87.23 | 248 | -- | -- |
| 20.74 | 0.212 | 12.1 | 1.17 | 0.235 | 0.305 | -- | -- | 0.456 | 18.7 | 85 | 232 | -- | -- |
| 21.25 | 0.215 | 12.1 | 1.21 | -- | 0.231 | -- | -0.755 | 0.443 | -- | 88.02 | 197 | -- | -- |
| 22.94 | 0.225 | 12.1 | 1.21 | 0.116 | -- | 0.221 | -- | 0.41 | 21.1 | -- | -- | -- | -- |
| 23.07 | 0.225 | 12.1 | 1.21 | 0.115 | -- | -- | -- | 0.409 | 22 | -- | -- | -- | -- |
| 22.57 | 0.221 | 12.1 | 1.18 | -- | 0.163 | -- | -- | 0.435 | -- | 85 | 133 | -- | -- |
| 55.73 | 0.348 | 12.1 | -- | 0.319 | 0.487 | -- | -- | 0.357 | 18.5 | 85.32 | 271 | -- | -- |
| 23.87 | 0.228 | 12.1 | 1.21 | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
| 61.41 | 0.367 | 12.1 | -- | 0.122 | -- | -- | -- | 0.275 | 22.7 | -- | -- | -- | -- |
| 59 | 0.358 | 12.1 | -- | -- | 0.274 | -- | -- | 0.322 | -- | 86.1 | 181 | -- | -- |
| 62.33 | 0.368 | 12.1 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.38 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 21 |
| 8 | 18.75 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 9 | 18.76 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 12 | 18.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 45 | 19.12 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 53 | 19.20 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 55 | 19.21 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 56 | 19.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 57 | 19.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 58 | 19.23 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 72 | 19.31 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 81 | 19.36 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 92 | 19.39 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 96 | 19.39 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 98 | 19.40 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 116 | 19.44 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 23 |
| 137 | 19.46 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 149 | 19.48 | humidity | 90.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 153 | 19.48 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 158 | 19.49 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 160 | 19.50 | humidity | 90.0 | 270 | < th | dose independent | no | NA | NA |
| 162 | 19.50 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 165 | 19.50 | humidity | 90.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 169 | 19.51 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 185 | 19.53 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 187 | 19.53 | temperature | 15.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 231 | 19.57 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 242 | 19.58 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 247 | 19.58 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 249 | 19.58 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 256 | 19.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 285 | 19.61 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 304 | 19.63 | humidity | 90.0 | 270 | < th | dose independent | sin | 7 | NA |
| 330 | 19.65 | humidity | 90.0 | 270 | > th | dose independent | sin | 8 | NA |
| 333 | 19.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 344 | 19.66 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 360 | 19.67 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 376 | 19.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 407 | 19.72 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 461 | 19.75 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 493 | 19.77 | humidity | 80.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 502 | 19.78 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 512 | 19.79 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 528 | 19.80 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 529 | 19.80 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 530 | 19.80 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 570 | 19.82 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 574 | 19.83 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 614 | 19.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 635 | 19.86 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 658 | 19.88 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 659 | 19.88 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 670 | 19.88 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 694 | 19.90 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 701 | 19.90 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 713 | 19.91 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 731 | 19.92 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 748 | 19.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 757 | 19.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 797 | 19.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 802 | 19.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 810 | 19.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 815 | 19.96 | temperature | 30.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 816 | 19.96 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 839 | 19.97 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 888 | 19.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 893 | 19.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 21 |
| 905 | 19.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 934 | 20.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 938 | 20.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 959 | 20.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 965 | 20.01 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 966 | 20.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 999 | 20.02 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 18 |