Os01g0782700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1).
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Os01g0782700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.34 | 0.572 | 8.71 | 0.00177 | 0.297 | -2.67 | 2.99 | 1.5 | -0.342 | 5.95 | 13.3 | 783 | 1.4 | -- |
| 150.23 | 0.571 | 8.73 | -0.112 | 0.232 | -2.76 | 3.19 | -- | -0.348 | 6.3 | 12.41 | 861 | 1.78 | -- |
| 162.29 | 0.593 | 8.62 | 0.25 | 1.94 | -3.03 | -- | 4.49 | -0.269 | 5.17 | 8.982 | 792 | 4.46 | -- |
| 171.77 | 0.61 | 8.73 | -0.152 | 0.431 | -2.84 | -- | -- | -0.386 | 17.8 | 13.3 | 779 | 0.000182 | -- |
| 184.49 | 0.633 | 8.67 | 0.404 | -- | -2.44 | -- | 2.78 | -0.185 | -- | 11.06 | 983 | 2.41 | -- |
| 245.39 | 0.734 | 8.86 | -0.738 | 1.27 | -- | 0.203 | -- | -0.823 | 0.632 | -- | -- | -- | -- |
| 245.54 | 0.734 | 8.86 | -0.745 | 1.27 | -- | -- | -- | -0.824 | 0.562 | -- | -- | -- | -- |
| 172.2 | 0.611 | 8.75 | -0.189 | -- | -2.71 | -- | -- | -0.413 | -- | 13.3 | 799 | 0.833 | -- |
| 171.88 | 0.611 | 8.76 | -- | 0.475 | -2.98 | -- | -- | -0.39 | 17.2 | 12.66 | 808 | 0.0647 | -- |
| 347.29 | 0.871 | 8.84 | -0.701 | -- | -- | -- | -- | -0.802 | -- | -- | -- | -- | -- |
| 260.18 | 0.755 | 8.85 | -- | 1.26 | -- | -- | -- | -0.741 | 0.533 | -- | -- | -- | -- |
| 172.86 | 0.612 | 8.74 | -- | -- | -2.79 | -- | -- | -0.375 | -- | 13.45 | 813 | 0.941 | -- |
| 360.24 | 0.886 | 8.82 | -- | -- | -- | -- | -- | -0.724 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 2 | 148.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 3 | 149.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 149.47 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 21 | 151.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 37 | 154.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 142 | 161.63 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 148 | 162.18 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 153 | 162.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 205 | 164.55 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 218 | 164.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 237 | 165.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 14 |
| 334 | 168.54 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 17 |
| 382 | 169.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 428 | 170.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 468 | 171.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 484 | 171.93 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 507 | 172.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 524 | 172.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 535 | 173.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 12 |
| 579 | 173.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 590 | 173.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 660 | 174.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 684 | 175.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 693 | 175.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 724 | 175.48 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 13 |
| 816 | 176.68 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 864 | 177.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 873 | 177.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 888 | 177.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 939 | 177.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 957 | 177.99 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |