Os04g0643600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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Os04g0643600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.84 | 0.14 | 12.6 | 0.313 | 0.282 | -0.0659 | -0.0381 | -1.52 | 0.336 | 2.5 | 30.2 | 663 | -- | -- |
| 8.85 | 0.139 | 12.6 | 0.463 | 0.273 | -0.248 | -0.0374 | -- | 0.344 | 2.29 | 30.2 | 530 | -- | -- |
| 8.82 | 0.138 | 12.6 | 0.345 | 0.272 | -0.103 | -- | -1.34 | 0.338 | 2.37 | 30.2 | 558 | -- | -- |
| 8.85 | 0.139 | 12.6 | 0.458 | 0.268 | -0.253 | -- | -- | 0.341 | 2.34 | 30.4 | 537 | -- | -- |
| 10.91 | 0.154 | 12.5 | 0.539 | -- | -0.318 | -- | 0.142 | 0.415 | -- | 28.6 | 292 | -- | -- |
| 10.09 | 0.149 | 12.6 | 0.422 | 0.311 | -- | -0.0154 | -- | 0.361 | 3.21 | -- | -- | -- | -- |
| 10.09 | 0.149 | 12.6 | 0.422 | 0.311 | -- | -- | -- | 0.361 | 3.21 | -- | -- | -- | -- |
| 10.2 | 0.149 | 12.5 | 0.501 | -- | -0.258 | -- | -- | 0.412 | -- | 26.94 | 143 | -- | -- |
| 14.16 | 0.175 | 12.6 | -- | 0.287 | -0.178 | -- | -- | 0.297 | 2.66 | 30.4 | 525 | -- | -- |
| 15.58 | 0.184 | 12.6 | 0.435 | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
| 14.78 | 0.18 | 12.6 | -- | 0.319 | -- | -- | -- | 0.314 | 3.21 | -- | -- | -- | -- |
| 16.68 | 0.19 | 12.6 | -- | -- | -0.217 | -- | -- | 0.351 | -- | 26.97 | 145 | -- | -- |
| 20.58 | 0.212 | 12.6 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.26 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 2 | 8.29 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 5 | 8.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 52 | 8.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 54 | 8.58 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 16 | 2 |
| 62 | 8.60 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 4 |
| 70 | 8.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 80 | 8.63 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 84 | 8.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 93 | 8.64 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 96 | 8.65 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 11 | 12 |
| 102 | 8.66 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 16 |
| 103 | 8.66 | temperature | 25 | 30 | > th | dose independent | rect. | 3 | 17 |
| 119 | 8.69 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 136 | 8.71 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 137 | 8.71 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 145 | 8.72 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 150 | 8.72 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 10 |
| 160 | 8.72 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 173 | 8.73 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 8 |
| 188 | 8.74 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 193 | 8.74 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 17 |
| 197 | 8.74 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 15 | 8 |
| 204 | 8.75 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 17 |
| 209 | 8.75 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 16 | 6 |
| 221 | 8.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 232 | 8.77 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 7 |
| 247 | 8.78 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 248 | 8.78 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 255 | 8.78 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 22 |
| 256 | 8.78 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 272 | 8.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 273 | 8.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 312 | 8.80 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 317 | 8.80 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 23 |
| 337 | 8.81 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 5 |
| 341 | 8.81 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 20 |
| 343 | 8.81 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 344 | 8.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 348 | 8.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 350 | 8.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 368 | 8.82 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 8 |
| 393 | 8.83 | temperature | 30 | 270 | < th | dose independent | sin | 17 | NA |
| 406 | 8.83 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 12 |
| 435 | 8.83 | temperature | 30 | 720 | > th | dose dependent | sin | 3 | NA |
| 443 | 8.83 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 7 |
| 556 | 8.85 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 629 | 8.86 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 9 |
| 684 | 8.87 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 8 |
| 703 | 8.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 764 | 8.88 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 23 |
| 766 | 8.88 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 767 | 8.88 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 821 | 8.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 834 | 8.89 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 989 | 8.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 995 | 8.90 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |