FiT-DB / Search/ Help/ Sample detail

Os05g0502000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.55 (0.0269) R2 : 0.419
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.678 (0.0642) R2dC : 0.142 R2C : 0.0533
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.845 (0.0567) R2dN8 : 0.366 R2N8 : 0.277
σ : 0.508
deviance : 117.88
__
_____
C
peak time of C : 0.599
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.47 0.459 9.58 -0.248 1.28 1.57 -1.68 0.728 -0.835 20.1 0.3077 765 -- --
95.82 0.456 9.58 -0.217 1.34 1.67 -2.04 -- -0.828 20 0.36 763 -- --
95.92 0.456 9.6 -0.266 1.67 2.1 -- 3.21 -0.836 20.7 0.42 893 -- --
108.4 0.485 9.58 -0.154 1.39 1.74 -- -- -0.838 19.9 0.3111 760 -- --
119.27 0.509 9.52 -0.000292 -- 1.94 -- 1.57 -0.687 -- 0.01133 3202 -- --
110.86 0.494 9.56 -0.366 0.662 -- -1.12 -- -0.883 23.7 -- -- -- --
115.08 0.502 9.56 -0.326 0.683 -- -- -- -0.882 0.623 -- -- -- --
116.01 0.502 9.51 0.111 -- 1.55 -- -- -0.779 -- 0.28 1703 -- --
108.73 0.486 9.58 -- 1.62 2.06 -- -- -0.8 19.6 0.2726 757 -- --
144.31 0.561 9.55 -0.302 -- -- -- -- -0.87 -- -- -- -- --
117.88 0.508 9.55 -- 0.678 -- -- -- -0.845 0.599 -- -- -- --
114.5 0.498 9.52 -- -- 1.33 -- -- -0.758 -- 0.29 1725 -- --
146.71 0.565 9.54 -- -- -- -- -- -0.836 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.85 temperature 30.0 720 < th dose independent rect. 18 14
2 90.36 wind 1.0 10 > th dose independent rect. 23 9
3 90.82 humidity 70.0 720 > th dose independent rect. 19 12
10 91.60 temperature 30.0 720 < th dose independent rect. 18 7
11 91.76 temperature 10.0 10 > th dose dependent rect. 1 14
16 92.05 temperature 20.0 10 > th dose independent rect. 1 14
18 92.19 temperature 10.0 270 > th dose dependent rect. 22 15
22 92.36 humidity 70.0 720 > th dose independent rect. 19 2
23 92.36 temperature 10.0 270 > th dose dependent sin 8 NA
24 92.40 temperature 15.0 720 > th dose independent rect. 7 12
27 92.47 temperature 15.0 720 > th dose independent rect. 9 10
33 92.63 temperature 15.0 720 > th dose independent rect. 7 14
35 92.66 radiation 1.0 720 < th dose dependent rect. 18 7
38 92.70 humidity 50.0 14400 > th dose independent rect. 24 9
40 92.72 temperature 30.0 270 < th dose independent rect. 24 13
46 93.00 humidity 60.0 270 > th dose independent rect. 24 13
47 93.04 atmosphere 995.0 720 > th dose independent rect. 7 12
50 93.11 temperature 10.0 720 > th dose dependent rect. 24 4
54 93.23 humidity 70.0 720 > th dose independent rect. 19 6
70 93.45 temperature 10.0 720 > th dose dependent rect. 22 6
81 93.63 wind 1.0 270 > th dose independent rect. 19 12
83 93.65 temperature 10.0 720 > th dose dependent rect. 18 10
84 93.66 temperature 10.0 720 > th dose dependent rect. 20 8
85 93.68 wind 1.0 30 > th dose independent sin 11 NA
86 93.70 humidity 80.0 720 > th dose independent rect. 21 1
89 93.72 humidity 60.0 720 > th dose dependent rect. 19 3
90 93.72 temperature 30.0 720 < th dose dependent rect. 19 4
93 93.75 precipitation 0.1 720 < th dose independent rect. 9 10
95 93.75 precipitation 0.1 720 < th dose independent rect. 7 13
96 93.75 precipitation 0.1 720 < th dose dependent rect. 9 10
97 93.75 precipitation 0.1 720 < th dose dependent rect. 7 13
117 93.87 radiation 1.0 720 < th dose dependent rect. 4 20
124 93.92 wind 9.0 1440 < th dose independent rect. 24 10
126 93.93 temperature 30.0 10 < th dose dependent sin 16 NA
127 93.93 temperature 30.0 90 < th dose dependent rect. 19 13
129 93.95 atmosphere 1000.0 10 > th dose independent sin 21 NA
134 93.96 temperature 10.0 720 > th dose dependent rect. 16 16
135 93.97 wind 1.0 30 > th dose independent rect. 15 10
136 93.97 humidity 50.0 10 > th dose independent rect. 1 14
137 93.97 radiation 1.0 270 < th dose dependent rect. 2 22
138 93.98 wind 7.0 720 < th dose independent rect. 19 12
139 93.98 atmosphere 995.0 720 > th dose independent rect. 1 18
143 94.00 temperature 30.0 90 < th dose dependent rect. 21 11
148 94.03 atmosphere 995.0 30 > th dose independent rect. 8 15
156 94.09 wind 9.0 10 < th dose independent rect. 1 14
160 94.10 temperature 15.0 720 > th dose independent rect. 24 19
164 94.13 temperature 10.0 720 > th dose dependent rect. 16 14
181 94.22 temperature 15.0 720 > th dose independent rect. 23 21
185 94.23 temperature 15.0 720 > th dose independent rect. 22 23
209 94.31 temperature 15.0 720 > th dose independent rect. 10 23
221 94.35 atmosphere 995.0 1440 > th dose independent rect. 2 14
225 94.37 wind 9.0 30 < th dose independent rect. 15 10
226 94.37 atmosphere 1010.0 720 < th dose independent rect. 8 10
228 94.38 temperature 15.0 720 > th dose independent rect. 19 16
229 94.38 atmosphere 995.0 10 > th dose dependent rect. 9 14
231 94.39 temperature 15.0 720 > th dose independent rect. 11 20
249 94.46 temperature 15.0 720 > th dose independent rect. 10 14
254 94.49 atmosphere 1015.0 720 < th dose independent rect. 7 14
258 94.51 radiation 40.0 30 < th dose independent rect. 15 10
267 94.53 temperature 20.0 90 > th dose independent rect. 8 14
268 94.53 precipitation 0.1 10 < th dose independent rect. 1 14
270 94.53 precipitation 0.1 10 < th dose dependent rect. 1 14
291 94.61 temperature 10.0 1440 > th dose independent rect. 16 10
296 94.61 temperature 10.0 1440 > th dose independent rect. 2 14
299 94.61 atmosphere 1000.0 30 > th dose independent rect. 1 14
301 94.62 temperature 10.0 30 > th dose independent rect. 15 10
302 94.62 precipitation 0.1 10 < th dose independent rect. 15 10
308 94.62 atmosphere 1015.0 30 < th dose independent rect. 1 14
309 94.62 atmosphere 1010.0 90 < th dose independent rect. 8 14
314 94.62 precipitation 0.1 10 < th dose dependent rect. 15 10
329 94.65 temperature 10.0 720 > th dose independent rect. 19 12
332 94.65 atmosphere 995.0 720 > th dose independent rect. 19 12
334 94.65 radiation 40.0 720 < th dose independent rect. 19 12
356 94.68 temperature 10.0 720 > th dose independent rect. 19 14
358 94.68 atmosphere 995.0 720 > th dose independent rect. 19 14
365 94.70 radiation 1.0 270 < th dose independent rect. 2 22
368 94.71 wind 5.0 90 < th dose independent rect. 22 10
382 94.74 temperature 10.0 720 > th dose independent rect. 21 10
383 94.74 temperature 30.0 720 < th dose independent rect. 21 10
384 94.74 humidity 50.0 720 > th dose independent rect. 21 10
386 94.74 atmosphere 995.0 720 > th dose independent rect. 21 10
387 94.74 radiation 40.0 720 < th dose independent rect. 21 10
396 94.76 atmosphere 995.0 720 > th dose independent rect. 16 19
421 94.84 wind 9.0 720 < th dose independent rect. 13 18
434 94.85 temperature 30.0 90 < th dose dependent rect. 15 10
435 94.85 atmosphere 995.0 90 > th dose dependent rect. 22 10
469 94.93 temperature 15.0 720 > th dose independent rect. 23 8
472 94.94 temperature 15.0 720 > th dose independent rect. 12 10
475 94.94 temperature 15.0 270 > th dose independent rect. 21 17
476 94.94 temperature 30.0 90 < th dose dependent sin 9 NA
486 94.97 atmosphere 1000.0 10 > th dose independent sin 16 NA
512 95.03 temperature 30.0 10 < th dose dependent rect. 15 10
515 95.04 humidity 50.0 30 > th dose independent rect. 15 10
516 95.04 precipitation 0.1 720 < th dose independent rect. 1 18
521 95.04 precipitation 0.1 720 < th dose dependent rect. 1 18
522 95.04 radiation 1.0 10 < th dose dependent rect. 4 20
523 95.05 atmosphere 1010.0 720 < th dose independent rect. 8 5
524 95.05 atmosphere 1000.0 90 > th dose independent rect. 15 10
535 95.07 atmosphere 1000.0 270 > th dose independent rect. 14 8
540 95.07 precipitation 0.1 720 < th dose independent rect. 16 19
542 95.07 precipitation 0.1 720 < th dose dependent rect. 16 19
543 95.08 humidity 60.0 720 > th dose independent rect. 7 6
546 95.08 wind 7.0 90 < th dose independent rect. 8 14
559 95.11 wind 7.0 720 < th dose independent rect. 19 6
564 95.11 temperature 10.0 720 > th dose dependent rect. 7 5
575 95.14 radiation 1.0 720 > th dose independent rect. 16 20
629 95.23 temperature 20.0 720 > th dose independent rect. 7 5
637 95.24 precipitation 0.1 30 < th dose independent rect. 8 15
639 95.24 precipitation 0.1 30 < th dose dependent rect. 8 15
640 95.24 temperature 30.0 10 < th dose dependent rect. 16 16
679 95.33 wind 1.0 720 > th dose independent rect. 19 6
695 95.35 wind 1.0 270 > th dose independent rect. 12 12
697 95.35 radiation 10.0 720 < th dose independent rect. 14 17
730 95.40 wind 1.0 720 > th dose independent rect. 7 5
738 95.42 temperature 30.0 30 < th dose independent sin 21 NA
739 95.42 temperature 15.0 720 > th dose independent rect. 11 8
742 95.43 wind 1.0 720 > th dose independent rect. 11 5
746 95.43 atmosphere 1015.0 720 < th dose independent rect. 24 19
771 95.45 humidity 50.0 720 > th dose dependent rect. 18 13
772 95.46 temperature 30.0 90 < th dose independent rect. 15 10
787 95.49 radiation 1.0 720 > th dose independent rect. 7 6
808 95.52 radiation 1.0 10 < th dose independent rect. 4 20
818 95.54 temperature 15.0 10 > th dose independent rect. 23 9
827 95.55 temperature 30.0 30 < th dose independent rect. 23 9
828 95.55 humidity 50.0 30 > th dose independent rect. 23 9
830 95.55 atmosphere 995.0 30 > th dose independent rect. 23 9
839 95.56 wind 1.0 10 > th dose independent sin 7 NA
844 95.56 humidity 50.0 1440 > th dose independent rect. 24 9
846 95.56 atmosphere 995.0 1440 > th dose independent rect. 24 9
878 95.58 temperature 30.0 10 < th dose dependent rect. 12 13
889 95.60 temperature 10.0 720 > th dose dependent rect. 1 1
890 95.60 radiation 40.0 10 < th dose dependent rect. 15 10
894 95.61 humidity 50.0 270 > th dose independent rect. 13 11
896 95.61 wind 9.0 720 < th dose dependent rect. 21 1
920 95.64 temperature 30.0 720 < th dose independent sin 3 NA
937 95.65 wind 9.0 720 < th dose independent rect. 11 5
938 95.65 radiation 40.0 30 < th dose independent rect. 23 9
978 95.69 temperature 20.0 90 > th dose independent rect. 8 21
995 95.71 wind 7.0 270 < th dose independent rect. 24 12