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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0163000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated channel A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0428) R2 : 0.112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.04 (0.164) R2dE : 0.0794 R2E : 0.0846
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.299 (0.0909) R2dN8 : 0.0277 R2N8 : 0.0329
σ : 0.803
deviance : 297.59
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.5
memory length : 41
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.2 0.803 3.43 -1.25 0.0628 4.48 0.642 -20.1 -0.292 23.5 1000 66 -- --
298.51 0.811 3.19 0.0721 0.0928 0.893 0.715 -- -0.294 23.8 1000 66 -- --
293.9 0.798 3.42 -1.26 0.0733 4.44 -- -19.9 -0.294 1.74 999.9 65 -- --
297.23 0.803 3.19 0.0471 0.0697 1.03 -- -- -0.293 23.4 999.6 41 -- --
294.19 0.799 3.44 -1.33 -- 4.63 -- -20.9 -0.298 -- 1000 65 -- --
320.38 0.839 3.2 0.231 0.0715 -- 0.67 -- -0.354 23.4 -- -- -- --
322.25 0.841 3.21 0.202 0.0758 -- -- -- -0.357 1.18 -- -- -- --
297.54 0.803 3.19 0.0442 -- 1.03 -- -- -0.295 -- 999.6 41 -- --
297.19 0.803 3.19 -- 0.081 1.04 -- -- -0.3 1.35 999.5 41 -- --
322.61 0.839 3.2 0.205 -- -- -- -- -0.356 -- -- -- -- --
323.33 0.841 3.21 -- 0.0793 -- -- -- -0.38 1.28 -- -- -- --
297.59 0.803 3.19 -- -- 1.04 -- -- -0.299 -- 999.5 41 -- --
323.72 0.84 3.21 -- -- -- -- -- -0.379 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.08 atmosphere 1000 10 < th dose independent rect. 1 10
11 285.45 atmosphere 1000 10 < th dose independent rect. 21 14
17 286.10 atmosphere 1000 90 < th dose independent rect. 5 5
20 286.19 atmosphere 1000 10 < th dose independent rect. 4 7
29 286.30 atmosphere 1000 270 < th dose independent rect. 5 2
30 286.39 atmosphere 1000 10 < th dose independent rect. 16 19
36 286.71 temperature 30 1440 > th dose independent rect. 12 1
50 287.62 temperature 30 1440 < th dose independent rect. 12 1
58 288.14 temperature 30 1440 < th dose independent rect. 10 3
62 288.29 temperature 30 1440 < th dose independent rect. 4 9
63 288.29 temperature 30 1440 < th dose independent rect. 19 18
67 288.33 temperature 30 1440 > th dose independent rect. 10 3
68 288.34 temperature 30 1440 < th dose independent rect. 7 6
69 288.34 temperature 30 1440 < th dose independent rect. 1 12
76 288.52 wind 1 14400 < th dose dependent rect. 2 1
79 288.61 temperature 30 1440 < th dose independent rect. 23 14
80 288.63 atmosphere 1000 270 < th dose independent rect. 1 7
88 288.91 atmosphere 1000 90 < th dose independent rect. 12 22
102 289.16 atmosphere 1005 90 < th dose dependent rect. 20 14
106 289.24 atmosphere 1005 10 < th dose dependent rect. 21 14
140 289.42 wind 1 14400 < th dose independent rect. 2 1
161 289.88 atmosphere 1000 270 > th dose independent rect. 21 14
175 289.97 atmosphere 1000 720 < th dose independent rect. 22 4
180 290.03 atmosphere 1000 720 < th dose independent rect. 23 2
183 290.10 wind 1 14400 > th dose independent rect. 2 1
243 290.88 temperature 30 1440 < th dose independent sin 8 NA
244 290.92 atmosphere 1000 90 < th dose independent rect. 20 19
252 291.02 atmosphere 1000 90 < th dose independent rect. 17 22
263 291.29 temperature 30 1440 > th dose dependent rect. 12 1
267 291.31 temperature 30 1440 > th dose independent rect. 16 22
287 291.52 temperature 30 1440 > th dose independent sin 8 NA
291 291.53 atmosphere 1000 90 < th dose independent rect. 20 21
327 291.68 atmosphere 1000 720 > th dose independent rect. 21 7
364 291.86 atmosphere 1000 90 < th dose independent rect. 4 23
393 292.07 atmosphere 1000 270 > th dose independent sin 8 NA
396 292.08 atmosphere 1000 270 < th dose independent sin 8 NA
411 292.14 atmosphere 1000 1440 > th dose independent rect. 16 2
419 292.19 atmosphere 1000 1440 < th dose independent rect. 16 2
429 292.31 atmosphere 1000 30 < th dose independent sin 10 NA
445 292.39 atmosphere 1000 720 > th dose independent rect. 19 9
477 292.48 atmosphere 1000 30 < th dose dependent rect. 5 6
481 292.49 atmosphere 1005 90 < th dose dependent rect. 23 11
507 292.67 atmosphere 1000 720 > th dose independent sin 12 NA
529 292.70 atmosphere 1000 720 < th dose independent sin 12 NA
556 292.76 atmosphere 1000 10 > th dose independent sin 10 NA
559 292.76 atmosphere 1005 720 < th dose dependent rect. 22 1
572 292.83 atmosphere 1000 90 < th dose independent no NA NA
605 292.92 atmosphere 1000 90 > th dose independent no NA NA
609 292.95 atmosphere 1005 720 < th dose dependent rect. 22 3
616 292.98 atmosphere 1000 720 > th dose independent rect. 16 15
642 293.09 atmosphere 1005 10 < th dose dependent rect. 18 17
682 293.22 atmosphere 1000 1440 > th dose independent rect. 21 1
704 293.28 atmosphere 1000 30 < th dose independent rect. 7 23
707 293.31 atmosphere 1005 1440 < th dose dependent rect. 17 1
747 293.37 atmosphere 1000 30 < th dose independent rect. 1 23
748 293.37 atmosphere 1000 30 < th dose independent rect. 23 23
759 293.41 atmosphere 1000 30 < th dose independent rect. 9 23
855 293.71 atmosphere 1005 720 < th dose dependent sin 12 NA
884 293.81 atmosphere 1000 10 > th dose independent no NA NA