Os06g0188000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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Os06g0188000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated channel C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.55 | 0.173 | 12.3 | 0.063 | 0.313 | 0.279 | -0.0609 | -0.691 | 0.0738 | 23 | 25.59 | 544 | -- | -- |
| 14.32 | 0.176 | 12.3 | 0.253 | 0.331 | 0.229 | -0.146 | -- | 0.146 | 22.7 | 25.2 | 526 | -- | -- |
| 13.57 | 0.172 | 12.3 | 0.06 | 0.313 | 0.281 | -- | -0.712 | 0.0715 | 23 | 25.55 | 544 | -- | -- |
| 14.44 | 0.177 | 12.3 | 0.253 | 0.334 | 0.232 | -- | -- | 0.138 | 22.9 | 25.3 | 524 | -- | -- |
| 17.79 | 0.196 | 12.3 | -0.0596 | -- | 0.458 | -- | -0.997 | 2.09e-05 | -- | 25.6 | 707 | -- | -- |
| 16.28 | 0.189 | 12.3 | 0.317 | 0.428 | -- | -0.212 | -- | 0.231 | 21.8 | -- | -- | -- | -- |
| 16.45 | 0.19 | 12.3 | 0.325 | 0.428 | -- | -- | -- | 0.231 | 21.8 | -- | -- | -- | -- |
| 19.32 | 0.205 | 12.3 | 0.209 | -- | 0.416 | -- | -- | 0.081 | -- | 25.57 | 710 | -- | -- |
| 16.11 | 0.187 | 12.3 | -- | 0.321 | 0.275 | -- | -- | 0.101 | 23.1 | 25.6 | 540 | -- | -- |
| 27.43 | 0.245 | 12.3 | 0.33 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 19.24 | 0.205 | 12.3 | -- | 0.429 | -- | -- | -- | 0.195 | 21.9 | -- | -- | -- | -- |
| 20.42 | 0.21 | 12.3 | -- | -- | 0.444 | -- | -- | 0.0471 | -- | 25.5 | 717 | -- | -- |
| 30.3 | 0.257 | 12.3 | -- | -- | -- | -- | -- | 0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 2 | 12.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 4 | 12.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 90 | 13.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 130 | 13.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 140 | 13.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 149 | 13.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 162 | 13.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 165 | 13.60 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 193 | 13.67 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 204 | 13.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 206 | 13.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 17 |
| 215 | 13.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 8 |
| 217 | 13.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 220 | 13.72 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 228 | 13.75 | wind | 3.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 239 | 13.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 16 |
| 242 | 13.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 245 | 13.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 246 | 13.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 8 |
| 247 | 13.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 248 | 13.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 259 | 13.78 | wind | 3.0 | 270 | < th | dose independent | rect. | 23 | 4 |
| 270 | 13.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 272 | 13.79 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 287 | 13.81 | humidity | 80.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 290 | 13.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 291 | 13.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 310 | 13.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 311 | 13.84 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 17 |
| 317 | 13.85 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 322 | 13.86 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 19 |
| 336 | 13.87 | wind | 5.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 352 | 13.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 356 | 13.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 357 | 13.89 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 388 | 13.91 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 392 | 13.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 428 | 13.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 429 | 13.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 430 | 13.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 432 | 13.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 18 |
| 435 | 13.94 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 439 | 13.94 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 13 |
| 460 | 13.97 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 465 | 13.97 | wind | 7.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 466 | 13.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 485 | 13.98 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 486 | 13.99 | temperature | 25.0 | 720 | > th | dose independent | sin | 18 | NA |
| 487 | 13.99 | temperature | 25.0 | 720 | < th | dose independent | sin | 18 | NA |
| 515 | 14.00 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 12 |
| 517 | 14.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 537 | 14.01 | temperature | 25.0 | 720 | > th | dose independent | rect. | 14 | 11 |
| 549 | 14.02 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 562 | 14.02 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 565 | 14.03 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 570 | 14.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 16 |
| 580 | 14.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 587 | 14.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 588 | 14.04 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 646 | 14.06 | wind | 3.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 682 | 14.08 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 705 | 14.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 706 | 14.09 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 711 | 14.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 16 |
| 715 | 14.09 | radiation | 10.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 726 | 14.10 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 734 | 14.10 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 738 | 14.10 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 21 |
| 742 | 14.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 23 |
| 748 | 14.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 752 | 14.11 | radiation | 1.0 | 90 | > th | dose independent | sin | 7 | NA |
| 753 | 14.11 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 770 | 14.11 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 789 | 14.12 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 825 | 14.13 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 834 | 14.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 8 |
| 837 | 14.14 | temperature | 20.0 | 30 | > th | dose independent | rect. | 24 | 17 |
| 842 | 14.14 | temperature | 25.0 | 720 | > th | dose independent | rect. | 22 | 23 |
| 848 | 14.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 877 | 14.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 878 | 14.15 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 887 | 14.16 | radiation | 1.0 | 90 | < th | dose independent | sin | 7 | NA |
| 888 | 14.16 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 6 |
| 901 | 14.16 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 23 |
| 917 | 14.16 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 22 | 21 |
| 919 | 14.17 | temperature | 25.0 | 720 | > th | dose independent | no | NA | NA |
| 925 | 14.17 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 975 | 14.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 19 |
| 987 | 14.18 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 7 | NA |