Os03g0646300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0646300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated channel A (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.93	(0.0429)	R²	:	0.557
β₁	:	-0.962	(0.163)	R²_dD	:	0.0396	R²_D	:	-0.0638
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-4.5	(0.192)	R²_dE	:	0.682	R²_E	:	0.486
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.531	(0.0983)	R²_dN8	:	0.0458	R²_N8	:	-0.0864
σ	:	0.785
deviance	:	284.01
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	28.48
memory length	:	736
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
278.23	0.784	5.98	-1.15	1.18	-4.4	-0.543	0.454	-0.567	20.5	25.79	1433	--	--
278.4	0.777	5.97	-1.06	1.19	-4.44	-0.545	--	-0.542	20.5	25.57	1433	--	--
278.85	0.778	6	-1.22	1.17	-4.28	--	0.949	-0.599	20.5	26.85	1428	--	--
279.32	0.778	5.97	-1.04	1.18	-4.44	--	--	-0.539	20.6	25.57	1433	--	--
280.31	0.78	5.97	-1.23	--	-4.49	--	1.47	-0.589	--	28.81	736	--	--
549	1.1	5.75	0.293	1.16	--	-0.277	--	0.421	21.1	--	--	--	--
549.26	1.1	5.75	0.302	1.16	--	--	--	0.422	21.1	--	--	--	--
284.01	0.785	5.93	-0.962	--	-4.5	--	--	-0.531	--	28.48	736	--	--
303.51	0.811	5.93	--	1.17	-3.88	--	--	-0.342	20.4	26.02	1381	--	--
626.47	1.17	5.72	0.305	--	--	--	--	0.415	--	--	--	--	--
551.67	1.1	5.76	--	1.16	--	--	--	0.388	21.1	--	--	--	--
305.54	0.814	5.89	--	--	-4.14	--	--	-0.348	--	28.77	724	--	--
628.93	1.17	5.73	--	--	--	--	--	0.381	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	277.30	temperature	30	720	< th	dose dependent	rect.	15	23
2	277.43	temperature	25	1440	< th	dose dependent	rect.	17	21
3	277.47	temperature	25	1440	< th	dose dependent	rect.	17	9
6	277.74	temperature	25	1440	< th	dose dependent	rect.	15	21
15	278.07	temperature	25	1440	< th	dose dependent	sin	15	NA
24	278.31	temperature	25	1440	< th	dose dependent	rect.	6	23
25	278.32	temperature	25	1440	< th	dose dependent	rect.	10	23
37	278.57	temperature	25	1440	< th	dose dependent	rect.	20	23
45	278.64	temperature	25	1440	< th	dose dependent	rect.	3	23
47	278.66	temperature	25	1440	< th	dose dependent	no	NA	NA
48	278.68	temperature	30	1440	< th	dose dependent	rect.	15	18
69	278.91	temperature	25	1440	< th	dose dependent	rect.	10	19
88	279.09	temperature	30	720	< th	dose dependent	rect.	24	23
186	280.12	temperature	10	1440	> th	dose dependent	rect.	17	16
207	280.33	temperature	25	1440	< th	dose dependent	rect.	21	2
266	280.98	temperature	10	1440	> th	dose dependent	sin	12	NA
290	281.20	temperature	10	1440	> th	dose dependent	rect.	17	10
319	281.43	temperature	10	720	> th	dose dependent	rect.	12	23
331	281.53	temperature	10	720	> th	dose dependent	rect.	20	23
577	283.24	temperature	10	1440	> th	dose dependent	rect.	20	6
582	283.26	temperature	10	1440	> th	dose dependent	rect.	21	2
597	283.35	temperature	10	720	> th	dose dependent	rect.	3	23
737	284.49	temperature	10	720	> th	dose dependent	no	NA	NA
914	285.78	temperature	10	1440	> th	dose dependent	rect.	7	23