Os02g0255000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide-and calmodulin-regulated ion channel 1).
FiT-DB / Search/ Help/ Sample detail
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Os02g0255000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide-and calmodulin-regulated ion channel 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.8 | 0.265 | 10.3 | 0.92 | 1.16 | -0.368 | -0.102 | 3.18 | -0.0161 | 7.93 | 18.7 | 4420 | -- | -- |
| 38.42 | 0.291 | 10.4 | 0.0344 | 1.16 | -0.743 | -0.0353 | -- | -0.227 | 8.65 | 11.15 | 20223 | -- | -- |
| 31.83 | 0.263 | 10.3 | 0.92 | 1.16 | -0.368 | -- | 3.19 | -0.0152 | 7.93 | 18.7 | 4426 | -- | -- |
| 38.42 | 0.291 | 10.4 | 0.0332 | 1.16 | -0.742 | -- | -- | -0.227 | 8.65 | 8.753 | 8836 | -- | -- |
| 104.87 | 0.477 | 10.3 | 1.03 | -- | -0.279 | -- | 3.3 | 0.0958 | -- | 17.74 | 9439 | -- | -- |
| 43.72 | 0.31 | 10.4 | -0.11 | 1.16 | -- | -0.0339 | -- | -0.331 | 7.96 | -- | -- | -- | -- |
| 43.72 | 0.31 | 10.4 | -0.111 | 1.16 | -- | -- | -- | -0.331 | 7.96 | -- | -- | -- | -- |
| 112.49 | 0.494 | 10.4 | 0.201 | -- | -0.554 | -- | -- | -0.149 | -- | 10.72 | 9375 | -- | -- |
| 38.45 | 0.29 | 10.4 | -- | 1.16 | -0.726 | -- | -- | -0.233 | 8.64 | 8.753 | 8836 | -- | -- |
| 117.54 | 0.507 | 10.5 | -0.0988 | -- | -- | -- | -- | -0.316 | -- | -- | -- | -- | -- |
| 44.05 | 0.31 | 10.4 | -- | 1.16 | -- | -- | -- | -0.319 | 7.97 | -- | -- | -- | -- |
| 112.54 | 0.494 | 10.4 | -- | -- | -0.477 | -- | -- | -0.218 | -- | 6.382 | 6468 | -- | -- |
| 117.8 | 0.507 | 10.5 | -- | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.40 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 2 | 30.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 3 | 30.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 7 | 30.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 8 | 30.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 7 |
| 9 | 30.53 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 12 | 30.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 13 | 30.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 4 |
| 16 | 30.59 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 17 | 30.60 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 19 | 30.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 20 | 30.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 24 | 30.63 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 27 | 30.64 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 29 | 30.65 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 30 | 30.65 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 39 | 30.68 | wind | 7.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 41 | 30.68 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 51 | 30.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 57 | 30.71 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 60 | 30.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 61 | 30.71 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 63 | 30.71 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 74 | 30.72 | wind | 7.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 75 | 30.72 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 82 | 30.73 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 85 | 30.73 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 88 | 30.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 90 | 30.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 91 | 30.75 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 97 | 30.76 | wind | 7.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 111 | 30.78 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 130 | 30.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 139 | 30.82 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 149 | 30.84 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 153 | 30.85 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 154 | 30.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 155 | 30.85 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 157 | 30.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 159 | 30.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 164 | 30.86 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 167 | 30.86 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 168 | 30.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 176 | 30.88 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 184 | 30.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 189 | 30.90 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 193 | 30.91 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 211 | 30.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 217 | 30.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 224 | 30.94 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 225 | 30.94 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 228 | 30.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 232 | 30.95 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 235 | 30.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 252 | 30.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 254 | 30.97 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 255 | 30.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 256 | 30.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 262 | 30.98 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 264 | 30.98 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 280 | 31.00 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 289 | 31.01 | wind | 9.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 290 | 31.01 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 291 | 31.01 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 293 | 31.01 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 304 | 31.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 330 | 31.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 339 | 31.05 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 347 | 31.06 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 349 | 31.06 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 354 | 31.06 | wind | 7.0 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 367 | 31.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 384 | 31.08 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 391 | 31.08 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 393 | 31.08 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 439 | 31.11 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 442 | 31.11 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 447 | 31.12 | temperature | 20.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 448 | 31.12 | temperature | 20.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 465 | 31.13 | wind | 7.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 466 | 31.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 468 | 31.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 487 | 31.14 | wind | 7.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 507 | 31.14 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 508 | 31.14 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 16 | 18 |
| 520 | 31.15 | temperature | 20.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 561 | 31.16 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 562 | 31.16 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 563 | 31.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 605 | 31.16 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 628 | 31.16 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 12 |
| 634 | 31.17 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 691 | 31.18 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 694 | 31.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 732 | 31.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 733 | 31.18 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 735 | 31.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 739 | 31.18 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 755 | 31.19 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 759 | 31.19 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 770 | 31.19 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 810 | 31.19 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 875 | 31.20 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 879 | 31.20 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 994 | 31.22 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |