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Os02g0627700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated channel A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0274) R2 : 0.859
β1 : -1.35 (0.0998) R2dD : 0.0546 R2D : 0.0365
β2 : 4.32 (0.0919) R2dC : 1.22 R2C : 0.603
β3 : -1.89 (0.11) R2dE : 0.163 R2E : -0.421
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.665 (0.0582) R2dN8 : 0.0531 R2N8 : 0.0104
σ : 0.51
deviance : 119.79
__
_____
C
peak time of C : 8.33
E
wheather : radiation
threshold : 0.222
memory length : 339
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.95
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.11 0.504 9.82 -1.36 4.42 -1.86 2.09 -1.59 -0.669 8.33 0.1999 310 3.11 --
117.09 0.504 9.81 -1.41 4.39 -1.99 1.1 -- -0.649 8.34 0.19 329 3.74 --
120.72 0.512 9.82 -1.33 4.46 -1.93 -- 0.182 -0.663 8.33 0.2299 315 3.29 --
119.79 0.51 9.82 -1.35 4.32 -1.89 -- -- -0.665 8.33 0.222 339 3.95 --
527.26 1.08 9.95 -1.42 -- 2.67 -- 0.211 -0.678 -- 0.2299 315 3.29 --
152.49 0.579 9.86 -1.38 3.45 -- 1.08 -- -0.681 7.39 -- -- -- --
155.66 0.584 9.86 -1.36 3.45 -- -- -- -0.683 7.39 -- -- -- --
156.28 0.582 9.99 -1.35 -- 3.42 -- -- -0.72 -- -2.084e-05 2021 3.46 --
161.61 0.592 9.83 -- 3.98 -1.73 -- -- -0.632 8.38 0.002803 399 4.9 --
788.55 1.31 9.94 -1.3 -- -- -- -- -0.627 -- -- -- -- --
204.46 0.669 9.82 -- 3.44 -- -- -- -0.532 7.41 -- -- -- --
204.46 0.666 9.92 -- -- 3.43 -- -- -0.532 -- -0.003882 2030 3.5 --
833.43 1.35 9.91 -- -- -- -- -- -0.482 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.46 temperature 10.0 270 > th dose dependent rect. 17 6
2 106.00 precipitation 0.1 270 < th dose independent rect. 21 9
3 106.00 precipitation 0.1 270 < th dose dependent rect. 21 9
4 106.03 atmosphere 995.0 270 > th dose independent rect. 17 17
5 106.58 precipitation 0.1 270 < th dose independent rect. 10 7
6 106.58 precipitation 0.1 270 < th dose dependent rect. 10 7
7 106.80 wind 9.0 270 < th dose independent rect. 10 7
8 106.80 temperature 10.0 270 > th dose independent rect. 10 7
9 106.80 atmosphere 1015.0 270 < th dose independent rect. 10 7
10 106.80 temperature 10.0 270 > th dose independent rect. 17 17
12 106.98 wind 9.0 270 < th dose independent rect. 17 17
14 107.36 humidity 50.0 270 > th dose independent rect. 17 17
15 107.60 wind 7.0 270 < th dose independent rect. 21 9
17 108.00 radiation 10.0 270 < th dose independent rect. 21 9
18 108.03 precipitation 0.1 270 < th dose independent rect. 11 18
19 108.03 precipitation 0.1 270 < th dose dependent rect. 11 18
20 108.52 radiation 20.0 270 < th dose dependent rect. 21 9
24 108.68 atmosphere 1015.0 270 < th dose independent rect. 6 15
28 108.86 wind 1.0 270 > th dose independent rect. 10 7
29 108.86 temperature 10.0 270 > th dose independent rect. 21 9
30 108.86 temperature 30.0 270 < th dose independent rect. 21 9
31 108.86 humidity 50.0 270 > th dose independent rect. 21 9
34 108.86 atmosphere 995.0 270 > th dose independent rect. 21 9
38 108.86 temperature 10.0 270 > th dose independent rect. 6 15
45 109.86 radiation 1.0 270 > th dose independent rect. 10 7
47 109.94 precipitation 0.1 270 < th dose independent rect. 23 17
48 109.94 precipitation 0.1 270 < th dose dependent rect. 23 17
55 110.23 wind 9.0 270 < th dose independent rect. 6 15
58 110.39 temperature 15.0 90 > th dose dependent rect. 19 7
71 110.68 temperature 15.0 270 > th dose independent rect. 5 6
75 110.81 atmosphere 995.0 270 > th dose independent rect. 10 7
76 110.81 wind 9.0 270 < th dose independent rect. 11 18
77 110.84 wind 1.0 270 > th dose independent rect. 16 7
79 111.02 wind 7.0 270 < th dose independent rect. 5 6
82 111.11 atmosphere 995.0 270 > th dose independent rect. 5 6
83 111.11 atmosphere 1015.0 270 < th dose independent rect. 5 6
84 111.11 temperature 10.0 270 > th dose independent rect. 11 18
85 111.25 humidity 50.0 270 > th dose independent rect. 5 6
86 111.30 precipitation 0.1 270 < th dose independent rect. 5 6
87 111.30 precipitation 0.1 270 < th dose dependent rect. 5 6
115 111.63 temperature 15.0 270 > th dose dependent rect. 18 3
124 111.91 precipitation 0.1 270 < th dose independent rect. 17 17
125 111.91 precipitation 0.1 270 < th dose dependent rect. 17 17
128 112.00 atmosphere 995.0 270 > th dose independent rect. 16 7
131 112.02 temperature 10.0 270 > th dose independent rect. 16 7
132 112.02 radiation 40.0 270 < th dose independent rect. 16 7
133 112.02 temperature 10.0 270 > th dose independent rect. 23 17
138 112.12 wind 9.0 270 < th dose independent rect. 23 17
153 112.47 wind 9.0 270 < th dose independent rect. 16 7
166 112.73 precipitation 0.1 270 < th dose independent rect. 1 15
167 112.73 precipitation 0.1 270 < th dose dependent rect. 1 15
170 112.79 atmosphere 1015.0 270 < th dose independent rect. 17 17
173 112.84 precipitation 0.1 270 < th dose independent rect. 6 15
174 112.84 precipitation 0.1 270 < th dose dependent rect. 6 15
181 113.05 wind 9.0 270 < th dose dependent rect. 21 8
200 113.45 wind 9.0 270 < th dose dependent rect. 5 6
223 113.61 atmosphere 995.0 270 > th dose independent rect. 23 17
224 113.62 atmosphere 1015.0 270 < th dose independent rect. 16 7
233 113.76 atmosphere 995.0 270 > th dose independent rect. 6 15
237 113.90 radiation 40.0 270 < th dose dependent rect. 16 7
238 113.93 temperature 10.0 90 > th dose dependent rect. 19 17
242 113.99 atmosphere 1015.0 270 < th dose independent rect. 23 17
250 114.13 temperature 30.0 270 < th dose independent rect. 5 6
315 114.72 precipitation 0.1 270 < th dose independent rect. 16 7
317 114.72 precipitation 0.1 270 < th dose dependent rect. 16 7
332 114.88 radiation 40.0 270 < th dose independent rect. 17 17
340 115.07 temperature 10.0 270 > th dose independent rect. 1 15
341 115.07 atmosphere 1015.0 270 < th dose independent rect. 1 15
364 115.18 temperature 30.0 270 < th dose independent rect. 17 17
369 115.22 temperature 25.0 270 > th dose independent rect. 18 3
424 115.85 radiation 1.0 270 < th dose dependent rect. 21 13
429 115.88 wind 1.0 270 > th dose independent rect. 17 17
433 115.93 radiation 1.0 270 < th dose independent rect. 21 13
437 115.97 humidity 50.0 270 > th dose independent rect. 11 6
449 116.01 radiation 1.0 270 > th dose independent rect. 17 18
462 116.15 wind 9.0 10 < th dose independent rect. 12 7
463 116.17 wind 9.0 10 < th dose independent rect. 19 17
473 116.33 wind 1.0 10 > th dose independent rect. 12 7
485 116.45 precipitation 0.1 10 < th dose independent rect. 12 7
486 116.45 precipitation 0.1 10 < th dose dependent rect. 12 7
493 116.54 temperature 10.0 10 > th dose independent rect. 12 7
495 116.54 atmosphere 1015.0 10 < th dose independent rect. 12 7
496 116.54 temperature 10.0 10 > th dose independent rect. 19 17
497 116.54 atmosphere 995.0 10 > th dose independent rect. 19 17
516 116.69 humidity 50.0 270 > th dose independent rect. 23 17
551 116.87 humidity 50.0 270 > th dose dependent rect. 21 8
566 117.01 atmosphere 995.0 270 > th dose independent rect. 11 18
571 117.06 precipitation 0.1 270 < th dose independent rect. 21 21
572 117.06 precipitation 0.1 270 < th dose dependent rect. 21 21
574 117.09 humidity 50.0 270 > th dose independent rect. 17 6
610 117.32 wind 9.0 270 < th dose dependent rect. 12 17
622 117.43 wind 1.0 270 > th dose independent rect. 4 7
707 117.80 precipitation 0.1 10 < th dose independent rect. 12 19
708 117.80 precipitation 0.1 10 < th dose dependent rect. 12 19
745 117.92 precipitation 0.1 270 < th dose independent rect. 9 22
747 117.92 precipitation 0.1 270 < th dose dependent rect. 9 22
759 117.99 wind 5.0 270 < th dose independent rect. 18 3
777 118.17 atmosphere 1015.0 270 < th dose independent rect. 22 7
805 118.26 humidity 90.0 270 < th dose independent rect. 11 6
814 118.32 wind 1.0 270 > th dose independent rect. 6 15
816 118.33 wind 1.0 30 > th dose independent rect. 19 17
844 118.54 atmosphere 995.0 270 > th dose independent rect. 18 3
845 118.54 atmosphere 1015.0 10 < th dose independent rect. 19 17
846 118.54 radiation 1.0 90 < th dose dependent sin 17 NA
862 118.65 temperature 10.0 270 > th dose dependent rect. 5 6
878 118.75 radiation 1.0 270 > th dose independent rect. 4 7
903 118.82 radiation 10.0 270 < th dose independent rect. 18 3
905 118.83 temperature 10.0 270 > th dose dependent rect. 11 5
910 118.87 atmosphere 1015.0 270 < th dose independent rect. 18 3
912 118.87 radiation 1.0 270 < th dose dependent sin 8 NA
930 118.99 wind 1.0 270 > th dose independent rect. 18 3
942 119.04 radiation 1.0 270 > th dose independent sin 9 NA
948 119.06 humidity 50.0 10 > th dose independent rect. 12 7
949 119.06 temperature 10.0 270 > th dose dependent rect. 23 6
957 119.10 radiation 10.0 270 < th dose dependent rect. 18 3
960 119.11 wind 1.0 270 > th dose independent rect. 5 17
966 119.13 temperature 10.0 270 > th dose independent rect. 18 3
967 119.13 humidity 50.0 270 > th dose independent rect. 18 3
973 119.13 wind 9.0 270 < th dose independent rect. 21 21
974 119.13 temperature 10.0 270 > th dose independent rect. 21 21
981 119.17 wind 9.0 10 < th dose independent rect. 12 19
992 119.23 radiation 1.0 90 < th dose dependent rect. 5 21