FiT-DB / Search/ Help/ Sample detail

Os09g0558300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclic nucleotide-gated channel A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.00949) R2 : 0.0263
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0701 (0.02) R2dN8 : 0.034 R2N8 : 0.0263
σ : 0.179
deviance : 14.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
8.98 0.141 12.4 0.204 0.29 -0.0716 -0.0434 -0.388 0.0814 6.49 70.56 4122 -- --
9.19 0.141 12.4 0.189 0.295 -0.0856 -0.0562 -- 0.0665 6.4 73.01 11538 -- --
8.99 0.14 12.4 0.204 0.29 -0.0722 -- -0.388 0.0814 6.5 70.49 4113 -- --
9.19 0.141 12.4 0.191 0.29 -0.0896 -- -- 0.0661 6.41 73.19 11494 -- --
13.31 0.17 12.4 0.22 -- -0.0863 -- -0.43 0.0793 -- 72 4266 -- --
9.37 0.143 12.4 0.179 0.291 -- -0.0513 -- 0.0844 6.38 -- -- -- --
9.37 0.143 12.4 0.179 0.29 -- -- -- 0.0846 6.39 -- -- -- --
13.48 0.172 12.4 0.19 -- 0.0529 -- -- 0.0902 -- 72 4266 -- --
10.09 0.148 12.4 -- 0.299 -0.0725 -- -- 0.0503 6.24 74 11950 -- --
13.75 0.173 12.4 0.186 -- -- -- -- 0.0908 -- -- -- -- --
10.21 0.15 12.4 -- 0.293 -- -- -- 0.0647 6.36 -- -- -- --
14.06 0.175 12.4 -- -- 0.161 -- -- 0.0658 -- 65.61 47520 -- --
14.67 0.179 12.4 -- -- -- -- -- 0.0701 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 8.29 atmosphere 1015.0 10 < th dose dependent rect. 20 13
11 8.47 atmosphere 1015.0 720 < th dose dependent rect. 21 1
25 8.51 wind 1.0 720 > th dose independent rect. 10 6
31 8.52 atmosphere 1010.0 10 < th dose independent rect. 21 12
37 8.55 wind 7.0 720 < th dose independent rect. 16 18
42 8.59 atmosphere 1010.0 10 < th dose dependent rect. 14 19
43 8.61 atmosphere 1010.0 720 < th dose independent rect. 21 1
44 8.61 wind 7.0 720 < th dose independent rect. 22 6
45 8.61 radiation 10.0 720 < th dose independent rect. 20 10
53 8.63 wind 7.0 720 < th dose independent rect. 16 11
54 8.63 temperature 15.0 10 > th dose independent rect. 21 12
61 8.65 temperature 15.0 720 > th dose independent rect. 21 1
62 8.65 wind 5.0 720 < th dose independent rect. 17 2
63 8.65 wind 7.0 720 < th dose independent rect. 15 4
75 8.66 atmosphere 1010.0 90 < th dose dependent rect. 23 9
87 8.68 atmosphere 995.0 720 > th dose independent rect. 16 18
92 8.69 atmosphere 1000.0 720 > th dose independent rect. 22 5
102 8.70 humidity 70.0 720 > th dose independent rect. 8 2
105 8.70 temperature 15.0 720 > th dose independent rect. 10 6
109 8.70 atmosphere 1010.0 90 < th dose dependent rect. 5 3
117 8.71 atmosphere 995.0 90 > th dose dependent rect. 17 12
119 8.72 wind 5.0 1440 > th dose independent rect. 14 1
122 8.72 humidity 60.0 720 > th dose independent rect. 18 14
123 8.72 humidity 50.0 720 > th dose dependent rect. 8 2
127 8.72 atmosphere 995.0 10 > th dose dependent rect. 17 14
128 8.73 wind 5.0 1440 < th dose independent rect. 14 1
133 8.73 precipitation 0.1 720 < th dose independent rect. 10 6
136 8.73 radiation 40.0 10 < th dose independent rect. 21 12
140 8.73 precipitation 0.1 720 < th dose dependent rect. 10 6
143 8.73 atmosphere 995.0 270 > th dose dependent rect. 15 13
150 8.74 temperature 10.0 720 > th dose independent rect. 22 6
151 8.74 temperature 30.0 720 < th dose independent rect. 22 6
152 8.74 humidity 50.0 720 > th dose independent rect. 22 6
156 8.74 radiation 1.0 720 < th dose independent rect. 22 6
161 8.74 wind 1.0 720 > th dose independent rect. 12 10
165 8.74 temperature 10.0 720 > th dose independent rect. 4 18
169 8.74 radiation 1.0 720 < th dose dependent rect. 22 6
174 8.74 radiation 10.0 720 < th dose dependent rect. 20 10
181 8.75 atmosphere 1015.0 720 < th dose independent rect. 10 6
183 8.75 wind 9.0 10 < th dose independent rect. 21 12
184 8.75 temperature 10.0 10 > th dose independent rect. 9 12
187 8.75 temperature 30.0 10 < th dose independent rect. 21 12
188 8.75 humidity 50.0 10 > th dose independent rect. 21 12
190 8.75 atmosphere 995.0 10 > th dose independent rect. 21 12
191 8.75 atmosphere 1015.0 10 < th dose independent rect. 9 12
194 8.75 precipitation 0.1 10 < th dose independent rect. 9 12
195 8.75 wind 5.0 90 < th dose independent rect. 16 13
196 8.75 temperature 10.0 720 > th dose independent rect. 16 18
200 8.75 precipitation 0.1 10 < th dose dependent rect. 9 12
203 8.76 wind 9.0 720 < th dose independent rect. 9 1
205 8.76 temperature 10.0 720 > th dose independent rect. 9 1
207 8.76 temperature 30.0 720 < th dose independent rect. 21 1
208 8.76 humidity 50.0 720 > th dose independent rect. 9 1
209 8.76 humidity 50.0 720 > th dose independent rect. 21 1
212 8.76 atmosphere 995.0 720 > th dose independent rect. 9 1
213 8.76 atmosphere 995.0 720 > th dose independent rect. 21 1
214 8.76 atmosphere 1015.0 720 < th dose independent rect. 9 1
215 8.76 radiation 1.0 720 < th dose independent rect. 21 1
221 8.76 wind 9.0 720 < th dose independent rect. 10 6
223 8.76 precipitation 0.1 720 < th dose independent rect. 22 6
224 8.76 wind 9.0 720 < th dose independent rect. 24 10
225 8.76 humidity 50.0 720 > th dose independent rect. 24 10
228 8.76 temperature 10.0 1440 > th dose independent rect. 10 12
232 8.76 temperature 10.0 1440 > th dose independent rect. 22 12
238 8.76 atmosphere 995.0 10 > th dose independent rect. 9 12
240 8.76 atmosphere 995.0 1440 > th dose independent rect. 22 12
244 8.76 radiation 30.0 720 < th dose independent rect. 18 14
247 8.76 temperature 10.0 720 > th dose independent rect. 10 23
248 8.76 temperature 10.0 720 > th dose independent rect. 22 23
249 8.76 radiation 1.0 720 < th dose dependent rect. 21 1
254 8.76 precipitation 0.1 720 < th dose dependent rect. 22 6
262 8.76 atmosphere 1010.0 10 < th dose dependent rect. 12 21
263 8.77 wind 5.0 720 > th dose independent rect. 18 1
264 8.77 precipitation 0.1 720 < th dose independent rect. 9 1
278 8.77 temperature 10.0 720 > th dose independent rect. 12 10
279 8.77 temperature 10.0 720 > th dose independent rect. 24 10
280 8.77 atmosphere 995.0 720 > th dose independent rect. 24 10
284 8.77 temperature 10.0 720 > th dose independent rect. 10 14
285 8.77 temperature 10.0 720 > th dose independent rect. 22 14
286 8.77 atmosphere 995.0 720 > th dose independent rect. 22 14
293 8.77 precipitation 0.1 720 < th dose dependent rect. 9 1
294 8.77 atmosphere 1005.0 270 < th dose dependent rect. 3 2
300 8.77 wind 9.0 720 < th dose dependent rect. 16 3
303 8.77 atmosphere 1005.0 90 < th dose dependent rect. 1 7
321 8.78 atmosphere 995.0 720 > th dose independent rect. 16 11
335 8.78 wind 3.0 1440 > th dose dependent rect. 14 1
336 8.78 wind 9.0 720 < th dose dependent rect. 17 1
337 8.78 humidity 50.0 720 > th dose dependent rect. 21 1
340 8.78 temperature 25.0 90 > th dose dependent rect. 17 10
344 8.78 wind 1.0 10 > th dose dependent rect. 21 12
354 8.79 wind 5.0 4320 > th dose independent rect. 18 1
355 8.79 radiation 1.0 720 > th dose independent rect. 9 1
356 8.79 wind 9.0 720 < th dose independent rect. 20 2
357 8.79 atmosphere 995.0 720 > th dose independent rect. 15 5
358 8.79 temperature 10.0 720 > th dose independent rect. 8 10
359 8.79 temperature 10.0 720 > th dose independent rect. 20 10
360 8.79 temperature 30.0 720 < th dose independent rect. 20 10
361 8.79 humidity 50.0 720 > th dose independent rect. 20 10
364 8.79 atmosphere 995.0 720 > th dose independent rect. 20 10
365 8.79 atmosphere 1015.0 720 < th dose independent rect. 8 10
384 8.79 temperature 10.0 720 > th dose independent rect. 6 14
385 8.79 temperature 10.0 720 > th dose independent rect. 18 14
387 8.79 humidity 50.0 720 > th dose independent rect. 22 14
388 8.79 atmosphere 1015.0 720 < th dose independent rect. 6 14
411 8.80 wind 5.0 4320 < th dose independent rect. 18 1
413 8.80 precipitation 0.1 720 < th dose independent rect. 21 1
417 8.80 atmosphere 995.0 720 > th dose independent rect. 16 3
420 8.80 precipitation 0.1 720 < th dose independent rect. 24 10
426 8.80 wind 9.0 270 < th dose independent rect. 3 12
431 8.80 radiation 30.0 270 < th dose independent rect. 15 12
432 8.80 precipitation 0.1 30 < th dose independent rect. 21 12
437 8.80 atmosphere 1005.0 30 > th dose independent rect. 18 13
439 8.80 wind 1.0 720 > th dose independent rect. 10 14
441 8.80 temperature 30.0 720 < th dose independent rect. 18 14
444 8.80 atmosphere 1015.0 720 < th dose independent rect. 4 18
445 8.80 wind 9.0 720 < th dose dependent rect. 9 1
446 8.80 wind 9.0 1440 < th dose dependent rect. 14 1
447 8.80 precipitation 0.1 720 < th dose dependent rect. 21 1
457 8.80 precipitation 0.1 720 < th dose dependent rect. 24 10
459 8.80 precipitation 0.1 30 < th dose dependent rect. 21 12
476 8.81 atmosphere 1015.0 720 < th dose independent rect. 12 10
478 8.81 atmosphere 1000.0 270 > th dose independent rect. 22 12
486 8.81 wind 9.0 720 < th dose independent rect. 22 14
488 8.81 precipitation 0.1 720 < th dose independent rect. 22 14
493 8.81 atmosphere 995.0 720 > th dose independent rect. 22 22
499 8.81 atmosphere 1005.0 270 < th dose dependent rect. 1 5
504 8.81 temperature 25.0 10 > th dose dependent rect. 17 9
512 8.81 temperature 25.0 10 > th dose dependent rect. 17 13
515 8.81 precipitation 0.1 720 < th dose dependent rect. 22 14
518 8.82 radiation 10.0 720 < th dose independent rect. 5 1
532 8.82 atmosphere 1005.0 90 < th dose independent rect. 1 7
541 8.82 atmosphere 995.0 720 > th dose independent rect. 8 10
571 8.82 radiation 1.0 10 > th dose dependent rect. 14 19
579 8.83 wind 5.0 720 > th dose independent rect. 18 5
582 8.83 radiation 30.0 720 < th dose independent rect. 3 5
592 8.83 wind 9.0 720 < th dose independent rect. 20 10
594 8.83 wind 1.0 30 > th dose independent rect. 9 12
603 8.83 temperature 25.0 30 > th dose independent rect. 18 14
604 8.83 atmosphere 995.0 720 > th dose independent rect. 6 14
605 8.83 radiation 20.0 1440 > th dose independent rect. 16 15
608 8.83 wind 5.0 720 < th dose independent rect. 8 20
650 8.84 wind 5.0 4320 < th dose independent rect. 14 5
651 8.84 humidity 70.0 720 > th dose independent rect. 3 5
666 8.84 wind 9.0 30 < th dose independent rect. 9 12
668 8.84 temperature 10.0 270 > th dose independent rect. 3 12
669 8.84 temperature 10.0 270 > th dose independent rect. 15 12
670 8.84 atmosphere 1015.0 270 < th dose independent rect. 3 12
688 8.84 wind 9.0 720 < th dose independent rect. 18 14
694 8.84 atmosphere 1010.0 10 < th dose dependent sin 10 NA
701 8.84 atmosphere 995.0 720 > th dose dependent rect. 16 3
723 8.85 wind 5.0 720 > th dose independent rect. 21 1
725 8.85 radiation 20.0 1440 > th dose independent rect. 16 1
730 8.85 wind 5.0 4320 > th dose independent rect. 14 5
731 8.85 humidity 50.0 720 > th dose independent rect. 10 5
773 8.85 precipitation 0.1 270 < th dose independent rect. 15 12
780 8.85 wind 5.0 30 > th dose independent rect. 14 18
781 8.85 precipitation 0.1 720 < th dose independent rect. 4 18
783 8.85 atmosphere 995.0 720 > th dose independent rect. 8 19
784 8.85 atmosphere 1010.0 10 < th dose independent rect. 14 19
787 8.85 wind 5.0 90 < th dose independent rect. 8 23
790 8.85 atmosphere 995.0 720 > th dose dependent rect. 17 1
814 8.85 precipitation 0.1 270 < th dose dependent rect. 15 12
818 8.85 precipitation 0.1 720 < th dose dependent rect. 4 18
823 8.86 wind 1.0 720 > th dose independent rect. 9 1
824 8.86 atmosphere 1005.0 270 < th dose independent rect. 3 2
829 8.86 wind 9.0 720 < th dose independent rect. 3 5
830 8.86 temperature 10.0 720 > th dose independent rect. 3 5
831 8.86 temperature 10.0 720 > th dose independent rect. 15 5
832 8.86 temperature 30.0 720 < th dose independent rect. 3 5
833 8.86 humidity 50.0 720 > th dose independent rect. 3 5
835 8.86 atmosphere 995.0 720 > th dose independent rect. 3 5
836 8.86 atmosphere 1015.0 720 < th dose independent rect. 15 5
844 8.86 humidity 70.0 720 > th dose independent rect. 24 10
845 8.86 radiation 40.0 10 < th dose independent rect. 7 10
846 8.86 radiation 10.0 30 < th dose independent rect. 9 10
850 8.86 wind 1.0 10 > th dose independent rect. 21 12
856 8.86 radiation 40.0 10 < th dose independent rect. 5 12
860 8.86 temperature 10.0 720 > th dose independent rect. 8 19
861 8.86 temperature 10.0 720 > th dose independent rect. 20 19
868 8.86 wind 5.0 4320 > th dose dependent rect. 18 1
892 8.86 temperature 25.0 10 > th dose dependent rect. 6 11
894 8.86 wind 9.0 270 < th dose dependent rect. 15 12
898 8.86 temperature 25.0 90 > th dose dependent rect. 3 13
913 8.86 atmosphere 1015.0 10 < th dose dependent rect. 10 23
928 8.87 temperature 15.0 720 > th dose independent rect. 19 5
929 8.87 atmosphere 1005.0 90 < th dose independent rect. 3 5
939 8.87 temperature 25.0 90 > th dose independent rect. 17 10
946 8.87 temperature 25.0 30 > th dose independent rect. 21 11
952 8.87 atmosphere 995.0 270 > th dose independent rect. 3 12
961 8.87 wind 5.0 30 > th dose independent rect. 14 16
963 8.87 wind 9.0 720 < th dose independent rect. 20 19
966 8.87 radiation 40.0 10 < th dose independent rect. 21 20
968 8.87 wind 9.0 720 < th dose independent rect. 22 22
969 8.87 atmosphere 1010.0 10 < th dose independent rect. 10 23
972 8.87 humidity 80.0 4320 > th dose dependent rect. 8 1
973 8.87 humidity 90.0 720 > th dose dependent rect. 20 1
977 8.87 wind 5.0 4320 > th dose dependent rect. 15 4