Os08g0254600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclic nucleotide-binding domain containing protein.
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Os08g0254600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclic nucleotide-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.94 | 0.428 | 2.83 | 1.04 | 0.159 | -123 | 0.102 | 439 | 0.072 | 6.87 | 0.4996 | 11 | -- | -- |
| 82.95 | 0.427 | 3.1 | 0.0872 | 0.157 | 3.29 | 0.102 | -- | 0.0727 | 6.88 | 0.4996 | 11 | -- | -- |
| 82.96 | 0.424 | 2.83 | 1.04 | 0.159 | -123 | -- | 439 | 0.0714 | 6.66 | 0.4996 | 11 | -- | -- |
| 82.97 | 0.427 | 3.1 | 0.0886 | 0.158 | 3.3 | -- | -- | 0.0723 | 6.67 | 0.4996 | 11 | -- | -- |
| 84.27 | 0.43 | 2.68 | 1.58 | -- | -194 | -- | 685 | 0.0756 | -- | 0.4996 | 11 | -- | -- |
| 93.66 | 0.454 | 3.11 | 0.118 | 0.181 | -- | 0.211 | -- | 0.0667 | 6.5 | -- | -- | -- | -- |
| 93.76 | 0.453 | 3.11 | 0.12 | 0.182 | -- | -- | -- | 0.0659 | 6.29 | -- | -- | -- | -- |
| 84.27 | 0.429 | 3.11 | 0.0917 | -- | 3.36 | -- | -- | 0.0755 | -- | 0.4996 | 11 | -- | -- |
| 83.18 | 0.427 | 3.11 | -- | 0.159 | 3.32 | -- | -- | 0.0625 | 6.64 | 0.4996 | 11 | -- | -- |
| 95.48 | 0.457 | 3.11 | 0.125 | -- | -- | -- | -- | 0.0698 | -- | -- | -- | -- | -- |
| 94.14 | 0.454 | 3.11 | -- | 0.184 | -- | -- | -- | 0.0525 | 6.26 | -- | -- | -- | -- |
| 84.49 | 0.43 | 3.11 | -- | -- | 3.38 | -- | -- | 0.0654 | -- | 0.4996 | 11 | -- | -- |
| 95.89 | 0.457 | 3.11 | -- | -- | -- | -- | -- | 0.0559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.62 | humidity | 7e+01 | 10 | < th | dose independent | rect. | 7 | 1 |
| 61 | 77.62 | humidity | 7e+01 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 121 | 77.72 | wind | 1e+00 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 122 | 77.73 | wind | 1e+00 | 10 | < th | dose independent | rect. | 7 | 1 |
| 123 | 77.78 | atmosphere | 1e+03 | 10 | < th | dose independent | rect. | 7 | 1 |
| 130 | 77.78 | atmosphere | 1e+03 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 152 | 82.91 | wind | 3e+00 | 10 | > th | dose independent | rect. | 4 | 1 |
| 154 | 82.91 | wind | 3e+00 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 156 | 82.95 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 3 | 1 |
| 157 | 82.95 | precipitation | 1e-01 | 90 | > th | dose independent | rect. | 4 | 1 |
| 165 | 82.95 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 166 | 82.95 | precipitation | 1e-01 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 300 | 83.18 | precipitation | 1e-01 | 10 | > th | dose dependent | sin | 5 | NA |
| 328 | 83.20 | precipitation | 1e-01 | 10 | < th | dose independent | sin | 6 | NA |
| 329 | 83.20 | precipitation | 1e-01 | 10 | < th | dose dependent | sin | 6 | NA |
| 426 | 83.35 | precipitation | 1e-01 | 10 | > th | dose independent | sin | 5 | NA |
| 736 | 83.97 | radiation | 3e+01 | 30 | > th | dose independent | rect. | 7 | 1 |
| 851 | 84.15 | precipitation | 1e-01 | 10 | > th | dose dependent | no | NA | NA |
| 980 | 84.44 | wind | 5e+00 | 90 | > th | dose independent | rect. | 3 | 4 |