Os02g0773400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ion transport domain containing protein.
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Os02g0773400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ion transport domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.18 | 0.249 | 8.48 | -1.54 | 0.767 | 0.335 | 0.252 | 2.95 | -0.106 | 6.41 | 0.43 | 4534 | -- | -- |
| 33.53 | 0.27 | 8.41 | -1.01 | 0.794 | 0.197 | 0.333 | -- | 0.0117 | 6.03 | 19.99 | 2579 | -- | -- |
| 28.27 | 0.248 | 8.49 | -1.54 | 0.764 | 0.356 | -- | 3 | -0.108 | 6.44 | 0.3997 | 4547 | -- | -- |
| 33.91 | 0.271 | 8.42 | -1.11 | 0.781 | 0.386 | -- | -- | 0.0331 | 6.19 | 9.761 | 3025 | -- | -- |
| 42.26 | 0.303 | 8.51 | -1.26 | -- | 1.1 | -- | 3.36 | -0.0341 | -- | 0.4698 | 5014 | -- | -- |
| 35.88 | 0.281 | 8.42 | -1.04 | 0.801 | -- | 0.492 | -- | -0.00909 | 5.94 | -- | -- | -- | -- |
| 36.45 | 0.283 | 8.42 | -1.03 | 0.804 | -- | -- | -- | -0.0107 | 6.04 | -- | -- | -- | -- |
| 41.69 | 0.301 | 8.42 | -1.08 | -- | 1.19 | -- | -- | 0.0793 | -- | 3.82 | 2177 | -- | -- |
| 58.89 | 0.357 | 8.34 | -- | 0.716 | 0.433 | -- | -- | 0.24 | 5.63 | 30.04 | 1060 | -- | -- |
| 69.91 | 0.391 | 8.44 | -1.01 | -- | -- | -- | -- | 0.00747 | -- | -- | -- | -- | -- |
| 64.43 | 0.375 | 8.4 | -- | 0.788 | -- | -- | -- | 0.104 | 6.11 | -- | -- | -- | -- |
| 62.66 | 0.369 | 8.36 | -- | -- | 0.951 | -- | -- | 0.287 | -- | 20.02 | 684 | -- | -- |
| 96.67 | 0.459 | 8.41 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 6 | 27.57 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 13 | 27.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 35 | 27.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 40 | 28.03 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 13 |
| 42 | 28.05 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 49 | 28.06 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 50 | 28.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 55 | 28.07 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 15 |
| 71 | 28.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 133 | 28.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 187 | 28.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 17 |
| 192 | 28.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 197 | 28.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 198 | 28.37 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 22 |
| 210 | 28.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 242 | 28.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 267 | 28.41 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 280 | 28.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 375 | 28.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 383 | 28.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 429 | 28.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 519 | 28.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 905 | 29.12 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |