Os02g0789100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclic nucleotide-binding domain containing protein.
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Os02g0789100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclic nucleotide-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.01 | 0.367 | 8.74 | -0.803 | 1.26 | -1.24 | 0.388 | -0.96 | 0.0793 | 2 | 17.81 | 4511 | -- | -- |
| 61.8 | 0.366 | 8.76 | -0.856 | 1.26 | -0.957 | 0.364 | -- | 0.0686 | 2.02 | 17.9 | 4535 | -- | -- |
| 61.51 | 0.365 | 8.73 | -0.805 | 1.26 | -1.31 | -- | -1.12 | 0.0822 | 2.03 | 17.72 | 4570 | -- | -- |
| 62.38 | 0.368 | 8.76 | -0.869 | 1.27 | -0.951 | -- | -- | 0.0665 | 2.03 | 17.9 | 4556 | -- | -- |
| 154.6 | 0.579 | 8.73 | -0.795 | -- | -1.48 | -- | -0.989 | 0.101 | -- | 17.86 | 3914 | -- | -- |
| 73.21 | 0.401 | 8.72 | -0.386 | 1.27 | -- | 0.365 | -- | 0.244 | 2.05 | -- | -- | -- | -- |
| 73.71 | 0.402 | 8.72 | -0.397 | 1.27 | -- | -- | -- | 0.242 | 2.08 | -- | -- | -- | -- |
| 155.68 | 0.581 | 8.75 | -0.827 | -- | -1.17 | -- | -- | 0.0967 | -- | 17.9 | 3917 | -- | -- |
| 72.57 | 0.399 | 8.73 | -- | 1.36 | -0.294 | -- | -- | 0.206 | 1.93 | 22.4 | 1620 | -- | -- |
| 171.13 | 0.611 | 8.71 | -0.344 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 77.86 | 0.413 | 8.71 | -- | 1.27 | -- | -- | -- | 0.286 | 2.07 | -- | -- | -- | -- |
| 149.86 | 0.57 | 8.77 | -- | -- | -0.806 | -- | -- | 0.0483 | -- | 25.3 | 1020 | -- | -- |
| 174.25 | 0.616 | 8.7 | -- | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 4 | 60.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 9 | 60.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 34 | 60.97 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 55 | 61.22 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 56 | 61.23 | temperature | 25.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 61 | 61.24 | temperature | 25.0 | 30 | < th | dose dependent | sin | 14 | NA |
| 66 | 61.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 97 | 61.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 161 | 61.70 | temperature | 10.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 169 | 61.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 171 | 61.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 184 | 61.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 191 | 61.86 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 192 | 61.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 195 | 61.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 255 | 61.99 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 299 | 62.04 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 300 | 62.05 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 379 | 62.13 | temperature | 25.0 | 720 | > th | dose independent | rect. | 12 | 12 |
| 415 | 62.16 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 503 | 62.22 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 696 | 62.50 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 739 | 62.58 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 777 | 62.66 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 785 | 62.67 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 786 | 62.67 | temperature | 25.0 | 720 | < th | dose independent | rect. | 13 | 9 |
| 885 | 62.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 11 |
| 891 | 62.88 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 895 | 62.89 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 923 | 62.92 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 967 | 63.00 | temperature | 25.0 | 720 | < th | dose independent | sin | 18 | NA |
| 982 | 63.01 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 20 |