BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0112700 Os07g0112700|AK073121
(178 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0112700 Cupredoxin domain containing protein 237 4e-63
Os03g0758500 Plastocyanin-like domain containing protein 128 2e-30
Os09g0557900 Similar to Protein phosphatase 2C gamma isofor... 90 7e-19
Os04g0545600 Similar to Uclacyanin 3-like protein 82 2e-16
Os06g0218600 Cupredoxin domain containing protein 75 2e-14
Os08g0482600 Plastocyanin-like domain containing protein 72 2e-13
Os08g0137400 Cupredoxin domain containing protein 71 3e-13
Os08g0138200 Cupredoxin domain containing protein 71 5e-13
Os09g0469300 Cupredoxin domain containing protein 70 6e-13
Os02g0653200 Plastocyanin-like domain containing protein 70 6e-13
Os02g0758800 Cupredoxin domain containing protein 70 6e-13
Os07g0105000 Cupredoxin domain containing protein 70 8e-13
AY569612 69 1e-12
Os09g0572700 Cupredoxin domain containing protein 68 3e-12
Os06g0718400 67 8e-12
Os06g0721800 Cupredoxin domain containing protein 66 1e-11
Os03g0791300 65 2e-11
Os04g0545400 Plastocyanin-like domain containing protein 65 3e-11
Os08g0138100 64 6e-11
>Os07g0112700 Cupredoxin domain containing protein
Length = 178
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 123/178 (69%)
Query: 1 MVCHRMXXXXXXXXXXXXXXXXXTNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEY 60
MVCHRM TNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEY
Sbjct: 1 MVCHRMLPLLVVAVALLPAAAVATNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEY 60
Query: 61 QNGRSDVVQVDEVGYDNCDKANAISSYSKGHSYAFQLKEAKDYYFICSYGYCYKGMKLAV 120
QNGRSDVVQVDEVGYDNCDKANAISSYSKGHSYAFQLKEAKDYYFICSYGYCYKGMKLAV
Sbjct: 61 QNGRSDVVQVDEVGYDNCDKANAISSYSKGHSYAFQLKEAKDYYFICSYGYCYKGMKLAV 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANPSYAALLAVAIIFLRML 178
LANPSYAALLAVAIIFLRML
Sbjct: 121 TAKKGSASSSSSGSGDSSSSSKSDTASSKSKSSAAASSLANPSYAALLAVAIIFLRML 178
>Os03g0758500 Plastocyanin-like domain containing protein
Length = 165
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 34 WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAISSYSKGHSY 93
W P+ +Y+ W +H PFYKGDWL+F Y G++DV+QVD GY+ CD NAIS+YSKG +Y
Sbjct: 34 WKPNTNYSDWPAQHGPFYKGDWLVFYYTAGQADVIQVDAAGYNTCDATNAISNYSKGRTY 93
Query: 94 AFQLKEAKDYYFICSYGYCYKGMKLAV 120
AF+L E K YYFICSYGYC+ GM+L +
Sbjct: 94 AFELNETKTYYFICSYGYCFGGMRLQI 120
>Os09g0557900 Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16)
(PP2C-gamma) (Protein phosphatase magnesium-dependent 1
gamma) (Protein phosphatase 1C) (Fibroblast growth
factor inducible protein 13) (FIN13)
Length = 168
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 TNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANA 83
T++ VG GWNP++DY+ W ++ FY GD + F YQ G +V +V++ GYDNC A
Sbjct: 22 TDHIVGANHGWNPNIDYSLW-SGNQTFYVGDLISFRYQKGTHNVFEVNQTGYDNCTMAGV 80
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSYGYCYKGMKLAV 120
+++ G + L +++ YYFIC G+C GMK+A+
Sbjct: 81 AGNWTSGKDF-IPLNDSRRYYFICGNGFCQAGMKVAI 116
>Os04g0545600 Similar to Uclacyanin 3-like protein
Length = 191
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAI 84
+YTVGD GW VDYTAW + + F GD LLF+Y + VV+V E + +C AN +
Sbjct: 35 DYTVGDSSGWTTGVDYTAWARG-KTFNIGDTLLFQYTSAGHSVVEVSEADHTSCSAANPL 93
Query: 85 SSYSKGHSYAFQLKEAKDYYFIC-SYGYCYKGMKLAV 120
SY G + L + YFIC S G+C GMKL V
Sbjct: 94 RSYKDGTTI-VTLTRSGTRYFICGSTGHCGAGMKLTV 129
>Os06g0218600 Cupredoxin domain containing protein
Length = 198
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 24 TNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANA 83
T YTVGD GW DYT W + F GD L+F Y G V +V Y C +NA
Sbjct: 23 TKYTVGDTSGWAMGADYTTWASDKK-FKMGDTLVFNYAGGAHSVDEVSAADYAACTASNA 81
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
+ S S G + LK A +YFIC G+C GMKL V
Sbjct: 82 LQSDSSG-TTTVTLKTAGKHYFICGIAGHCSNGMKLVV 118
>Os08g0482600 Plastocyanin-like domain containing protein
Length = 172
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCD-KANA 83
++ VGD +GWN VDYTAW K + F D L+F Y + V +V + YD C
Sbjct: 28 SFIVGDAQGWNTGVDYTAWAKG-KTFEANDTLVFRYARKQHTVTEVTKSDYDACTVSGKP 86
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSYG-YCYKGMKLAV 120
IS + G F ++YFIC G +C GMKLAV
Sbjct: 87 ISDFEGGALVTFIALSPGEHYFICKIGNHCASGMKLAV 124
>Os08g0137400 Cupredoxin domain containing protein
Length = 174
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 24 TNYTVGDEKG-WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKAN 82
T YTVG G W+ + DY WV + R F+ GD L F Y DVV+V + GYD C AN
Sbjct: 34 TTYTVGAPDGLWDMETDYKEWVAR-RTFHPGDKLTFTYSRELHDVVEVTKAGYDACSNAN 92
Query: 83 AISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
IS++ G+ L YF+C G+C GMK+ +
Sbjct: 93 NISAFRSGNDL-VALTAVGTRYFLCGLTGHCGSGMKIRI 130
>Os08g0138200 Cupredoxin domain containing protein
Length = 190
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 24 TNYTVGDEKG-WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKAN 82
T YTVG G W+ +Y W F GD L+F Y DVV+V + GYD C A+
Sbjct: 28 TTYTVGAPAGSWDTRTNYAQWASAAT-FRAGDRLVFRYSPAAHDVVEVTKAGYDACSAAS 86
Query: 83 AISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
I++++ G L YFIC + G+C GMKLAV
Sbjct: 87 PIATFNSGDD-TVPLAAVGTRYFICGFPGHCAAGMKLAV 124
>Os09g0469300 Cupredoxin domain containing protein
Length = 152
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 24 TNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANA 83
T YTVGD +GW V+Y W + F +GD L+F YQ V +V + +D+C+ N+
Sbjct: 23 TRYTVGDGEGWTTGVNYNNWANG-KFFRQGDELVFNYQARAHTVTEVSQTNFDSCN-GNS 80
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
S G S +L +YFIC+ G+C GMKLAV
Sbjct: 81 PLSNDNGGSTTIRLSYPGMHYFICTIPGHCSSGMKLAV 118
>Os02g0653200 Plastocyanin-like domain containing protein
Length = 202
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAI 84
+YTVGD GW+ VDY W K + F GD L+F+Y + V +V Y C +N+I
Sbjct: 27 DYTVGDTSGWSSGVDYDTWAKS-KTFSVGDSLVFQYSMMHT-VAEVSSADYSACSASNSI 84
Query: 85 SSYSKGHSYAFQLKEAKDYYFIC-SYGYCYKGMKLAV 120
SYS + L + YFIC + G+C GMKLAV
Sbjct: 85 QSYSD-QNTKIALTKPGTRYFICGTSGHCSGGMKLAV 120
>Os02g0758800 Cupredoxin domain containing protein
Length = 246
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 26 YTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAIS 85
YTVGD GW VDYT+W + F GD L+F+Y +G VV+V GY C ANA+
Sbjct: 28 YTVGDASGWTIGVDYTSWAGS-KSFKVGDSLVFKYASGAHTVVEVSAAGYLACAAANALG 86
Query: 86 SYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
S S G S LK +YFIC+ G+C GMK+ V
Sbjct: 87 SDSSG-STTVALKTPGKHYFICTIAGHCAGGMKMEV 121
>Os07g0105000 Cupredoxin domain containing protein
Length = 195
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 26 YTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAIS 85
+ VG W+ +Y AW + F +GD +LF Y + DVV+V + YD C ANA++
Sbjct: 28 HPVGGNGAWDTTGNYNAWSVSQK-FSQGDSILFTYPSSH-DVVEVPKASYDACSPANALA 85
Query: 86 SYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
SY+ G S +L +YFIC G+C GMKL V
Sbjct: 86 SYTGG-STTVKLDAPGKHYFICGVPGHCAAGMKLEV 120
>AY569612
Length = 211
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 25 NYTVGDEKG-WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANA 83
Y VG+ G W+ +YT WV + R F+ GD ++F+Y R DVV+V++ GYD+C + +
Sbjct: 26 TYNVGEPGGAWDLTTNYTNWVAQKR-FHPGDQIVFKYSAQRHDVVEVNKAGYDSCSTSTS 84
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSY-GYC 112
I++++ G+ L YFIC + G+C
Sbjct: 85 IATHTTGND-VIPLTSTGTRYFICGFPGHC 113
>Os09g0572700 Cupredoxin domain containing protein
Length = 172
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 25 NYTVGDEKG-WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANA 83
Y VG+ G W+ +YT WV + R F+ GD ++F+Y R DVV+V++ GYD+C + +
Sbjct: 26 TYNVGEPGGAWDLTTNYTNWVAQKR-FHPGDQIVFKYSAQRHDVVEVNKAGYDSCSTSTS 84
Query: 84 ISSYSKGHSYAFQLKEAKDYYFICSY-GYC 112
I++++ G+ L YFIC + G+C
Sbjct: 85 IATHTTGNDV-IPLTSTGTRYFICGFPGHC 113
>Os06g0718400
Length = 182
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDK---- 80
YTVGD W+ +Y W KH F GD L+F+Y + +V+QV E Y +CD
Sbjct: 26 EYTVGDGP-WDTGTNYATWSDKHA-FLAGDILVFQYVRSQHNVLQVTEATYRSCDTGGGG 83
Query: 81 -ANAISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
A I SY G+ + Y+FIC + G+C GM+LAV
Sbjct: 84 VAGVIKSYDTGYDRVQLTEPNATYWFICDFPGHCLGGMRLAV 125
>Os06g0721800 Cupredoxin domain containing protein
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDK---- 80
YTVGD W+ +Y W KH F GD L+F+Y + +V+QV E Y +CD
Sbjct: 26 EYTVGDGP-WDTGTNYATWSDKHA-FLAGDILVFQYVRSQHNVLQVTEATYRSCDTGGGG 83
Query: 81 -ANAISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
A I SY G+ + Y+FIC + G+C GM+LAV
Sbjct: 84 VAGVIKSYDTGYDRVQLTEPNATYWFICDFPGHCLGGMRLAV 125
>Os03g0791300
Length = 133
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 24 TNYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQV-DEVGYDNC-DKA 81
T Y VGD+ GW+ VDY AW R F GD L F Y G +VV V DE ++ C A
Sbjct: 33 TAYRVGDDSGWDNGVDYDAWAHGKR-FKVGDTLEFLYAEGAHNVVVVEDEGSFEACVAPA 91
Query: 82 NAISSYSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
NA + S + A L +A + FICS+ G+C GMKLAV
Sbjct: 92 NAPTLSSGDDTVA--LNQAGRWLFICSFDGHCQSGMKLAV 129
>Os04g0545400 Plastocyanin-like domain containing protein
Length = 185
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 25 NYTVGDEKGWNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAI 84
+Y VG+ GW+ D+ +W+ + F+ GD L+F+Y + + +VDE GY NC A+A+
Sbjct: 27 SYNVGNSAGWDISADFPSWLDG-KSFFVGDTLVFQYSKYHT-LSEVDEAGYRNCSTASAV 84
Query: 85 SSYSKGHSYAFQLKEAKDYYFICSYG-YCYKGMKLAV 120
S S G++ L D YF+C +C GM+L V
Sbjct: 85 LSSSDGNTT-VALTAPGDRYFVCGNELHCLGGMRLHV 120
>Os08g0138100
Length = 195
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 28 VGDEKG-WNPDVDYTAWVKKHRPFYKGDWLLFEYQNGRSDVVQVDEVGYDNCDKANAISS 86
VG G W+ +Y WV F GD L+F+Y DVV+V + GYD+C + +++
Sbjct: 31 VGAPAGSWDTRTNYAQWVSAVT-FRVGDQLVFKYSPAAHDVVEVTKAGYDSCSSSGPVAT 89
Query: 87 YSKGHSYAFQLKEAKDYYFICSY-GYCYKGMKLAV 120
++ G L YF+C + G+C GMK+AV
Sbjct: 90 FNSGDDT-VPLTATGTRYFMCGFPGHCAAGMKIAV 123
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,310,117
Number of extensions: 143246
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 20
Length of query: 178
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 84
Effective length of database: 12,127,685
Effective search space: 1018725540
Effective search space used: 1018725540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)