Os08g0482600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os08g0482600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.96 | 0.806 | 3.62 | -0.656 | 0.481 | 2.42 | -1.33 | -7.42 | -0.0377 | 5.75 | 7.01 | 735 | 17.1 | 1.03 |
| 307.49 | 0.817 | 3.61 | -0.666 | 0.522 | 4.14 | -1.33 | -- | -0.0624 | 5.74 | 7.107 | 733 | 17.1 | 1.04 |
| 288.83 | 0.792 | 3.62 | -0.627 | 0.502 | 2.62 | -- | -7.4 | -0.023 | 5.68 | 7.133 | 737 | 17.1 | 1.03 |
| 305.73 | 0.814 | 3.65 | -0.542 | 0.468 | 4.29 | -- | -- | 0.00565 | 5.7 | 7.111 | 737 | 17.1 | 1.02 |
| 299.39 | 0.806 | 3.62 | -0.677 | -- | 2.35 | -- | -8.92 | -0.0177 | -- | 7.131 | 737 | 17.1 | 1.03 |
| 447.7 | 0.992 | 3.76 | -1.27 | 0.621 | -- | -1.91 | -- | -0.357 | 2.53 | -- | -- | -- | -- |
| 460.69 | 1.01 | 3.75 | -1.22 | 0.618 | -- | -- | -- | -0.346 | 2.64 | -- | -- | -- | -- |
| 317 | 0.829 | 3.67 | -0.52 | -- | 4.25 | -- | -- | 0.00434 | -- | 7.19 | 740 | 17.1 | 1.02 |
| 313.59 | 0.825 | 3.66 | -- | 0.465 | 4.49 | -- | -- | 0.0309 | 5.97 | 7.111 | 737 | 17.1 | 1.02 |
| 482.97 | 1.03 | 3.75 | -1.2 | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
| 500.22 | 1.05 | 3.72 | -- | 0.594 | -- | -- | -- | -0.21 | 2.62 | -- | -- | -- | -- |
| 324.8 | 0.839 | 3.67 | -- | -- | 4.35 | -- | -- | 0.0017 | -- | 7.184 | 740 | 17.1 | 1.02 |
| 520.86 | 1.07 | 3.72 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 318.93 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 1 |
| 3 | 329.35 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 6 |
| 4 | 329.36 | wind | 7 | 720 | < th | dose independent | rect. | 14 | 16 |
| 6 | 329.59 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 9 |
| 25 | 332.62 | wind | 5 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 44 | 335.28 | wind | 7 | 720 | < th | dose independent | rect. | 17 | 8 |
| 48 | 336.99 | wind | 7 | 720 | < th | dose independent | rect. | 14 | 9 |
| 49 | 337.30 | wind | 7 | 720 | > th | dose independent | sin | 14 | NA |
| 58 | 338.24 | wind | 5 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 66 | 338.77 | wind | 7 | 720 | < th | dose independent | sin | 15 | NA |
| 82 | 341.03 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 135 | 344.94 | wind | 5 | 720 | > th | dose dependent | sin | 15 | NA |
| 144 | 345.64 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 170 | 346.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 171 | 346.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 235 | 349.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 237 | 349.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 254 | 350.78 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 22 |
| 255 | 350.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 269 | 351.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 270 | 351.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 280 | 351.68 | wind | 5 | 90 | > th | dose dependent | sin | 11 | NA |
| 295 | 352.66 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 296 | 352.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 327 | 354.29 | wind | 5 | 720 | > th | dose independent | rect. | 21 | 1 |
| 328 | 354.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 355 | 355.04 | wind | 7 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 372 | 355.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 387 | 355.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 403 | 356.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 412 | 356.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 438 | 356.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 443 | 357.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 444 | 357.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 509 | 358.43 | wind | 5 | 30 | > th | dose independent | sin | 10 | NA |
| 520 | 358.78 | wind | 5 | 30 | < th | dose independent | sin | 10 | NA |
| 522 | 358.89 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 540 | 359.47 | wind | 5 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 567 | 360.17 | wind | 5 | 90 | > th | dose dependent | rect. | 21 | 11 |
| 594 | 360.58 | wind | 9 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 614 | 360.84 | wind | 7 | 720 | < th | dose independent | rect. | 3 | 22 |
| 769 | 364.06 | wind | 7 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 808 | 364.68 | wind | 9 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 837 | 365.03 | wind | 5 | 30 | > th | dose independent | rect. | 20 | 12 |
| 842 | 365.12 | wind | 7 | 720 | > th | dose independent | rect. | 19 | 3 |
| 895 | 365.90 | wind | 5 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 969 | 366.82 | wind | 7 | 720 | > th | dose independent | no | NA | NA |
| 980 | 366.90 | wind | 9 | 720 | > th | dose independent | rect. | 20 | 1 |
| 990 | 367.01 | wind | 7 | 720 | > th | dose independent | rect. | 1 | 23 |