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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0112700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.051) R2 : 0.178
β1 : -1.03 (0.187) R2dD : 0.0567 R2D : 0.0454
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.87 (0.339) R2dE : 0.13 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0694 (0.109) R2dN8 : 0.00104 R2N8 : 0.000113
σ : 0.953
deviance : 418.5
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.7971
memory length : 68
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.4
open length of G : 11.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.9 0.955 3.71 -1.01 0.121 2.73 -1.24 -0.917 -0.0738 13.9 0.7991 74 17.3 12
413 0.947 3.71 -0.985 0.12 2.67 -1.27 -- -0.0736 14 0.7999 73 17.3 12
417.95 0.952 3.71 -1.11 0.138 2.87 -- -1.9 -0.0831 11.9 0.7919 72 17.3 11.9
417.82 0.952 3.7 -1.03 0.139 2.83 -- -- -0.0742 11.1 0.79 71 17.3 11.9
419.05 0.953 3.72 -1.07 -- 2.85 -- -1.61 -0.0873 -- 0.7954 72 17.3 11.9
474.49 1.02 3.72 -0.942 0.318 -- -1.16 -- -0.133 15.6 -- -- -- --
477.63 1.02 3.73 -0.961 0.348 -- -- -- -0.139 17.1 -- -- -- --
418.5 0.953 3.71 -1.03 -- 2.87 -- -- -0.0694 -- 0.7971 68 17.4 11.9
445.26 0.983 3.68 -- 0.149 2.74 -- -- 0.0345 12.6 0.7985 70 17.4 11.9
483.99 1.03 3.73 -0.974 -- -- -- -- -0.148 -- -- -- -- --
501.99 1.05 3.71 -- 0.365 -- -- -- -0.0324 17 -- -- -- --
445.57 0.983 3.69 -- -- 2.9 -- -- 0.0131 -- 0.7972 67 17.4 11.8
509.02 1.05 3.7 -- -- -- -- -- -0.0403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 417.87 temperature 20.0 270 > th dose dependent rect. 14 15
5 420.31 temperature 10.0 270 > th dose dependent rect. 14 14
14 422.19 temperature 20.0 90 > th dose dependent rect. 16 13
16 422.83 radiation 1.0 90 > th dose independent rect. 17 12
17 422.83 humidity 90.0 90 < th dose dependent rect. 17 1
18 422.90 radiation 1.0 90 > th dose independent rect. 17 2
42 424.06 temperature 30.0 30 > th dose dependent rect. 18 1
60 424.56 temperature 25.0 270 > th dose independent rect. 13 13
63 424.72 humidity 80.0 90 < th dose independent rect. 17 1
66 425.03 temperature 20.0 90 > th dose dependent rect. 17 1
67 425.14 atmosphere 1010.0 10 < th dose dependent rect. 18 1
80 426.31 temperature 20.0 720 > th dose dependent rect. 17 1
91 426.88 humidity 60.0 30 < th dose independent rect. 18 1
109 427.15 temperature 25.0 270 < th dose independent rect. 12 13
112 427.41 temperature 25.0 270 > th dose independent rect. 14 4
132 428.68 wind 1.0 10 > th dose independent rect. 19 21
143 429.42 temperature 25.0 720 > th dose dependent rect. 15 4
157 429.76 temperature 20.0 270 < th dose independent rect. 9 1
165 429.96 radiation 1.0 720 > th dose independent rect. 17 2
180 430.12 atmosphere 1005.0 90 < th dose independent rect. 17 2
181 430.14 radiation 1.0 270 < th dose dependent rect. 3 23
196 430.40 wind 3.0 90 > th dose independent rect. 17 1
234 430.95 temperature 30.0 30 > th dose independent rect. 18 1
250 430.97 temperature 20.0 90 > th dose independent rect. 17 1
255 431.12 radiation 1.0 720 < th dose dependent rect. 8 16
281 431.69 radiation 1.0 720 < th dose independent rect. 8 16
283 431.72 atmosphere 1010.0 30 < th dose dependent rect. 16 3
295 431.91 radiation 1.0 720 < th dose dependent sin 17 NA
296 431.92 radiation 1.0 270 < th dose independent rect. 4 22
325 432.20 temperature 20.0 270 > th dose dependent sin 16 NA
328 432.23 wind 9.0 10 < th dose independent rect. 19 23
332 432.28 temperature 25.0 720 > th dose dependent sin 14 NA
373 432.79 radiation 1.0 720 < th dose dependent rect. 17 8
407 433.13 radiation 1.0 270 > th dose independent rect. 14 5
443 433.35 radiation 1.0 720 < th dose independent rect. 17 8
445 433.36 atmosphere 1005.0 10 > th dose independent rect. 18 1
453 433.46 temperature 15.0 10 > th dose independent rect. 19 23
458 433.50 radiation 10.0 30 < th dose independent rect. 16 3
460 433.53 wind 5.0 10 < th dose independent rect. 18 1
461 433.53 temperature 25.0 720 > th dose independent rect. 17 1
462 433.54 radiation 1.0 720 < th dose dependent rect. 13 12
472 433.63 radiation 1.0 720 < th dose dependent rect. 15 10
479 433.75 humidity 90.0 270 < th dose dependent rect. 14 4
504 433.85 wind 9.0 10 < th dose dependent rect. 18 1
527 434.08 radiation 10.0 10 < th dose dependent rect. 16 3
530 434.10 radiation 1.0 720 < th dose independent rect. 15 9
532 434.11 wind 9.0 10 < th dose independent rect. 18 1
543 434.24 radiation 10.0 10 < th dose independent rect. 18 1
544 434.25 radiation 10.0 10 < th dose dependent rect. 18 1
569 434.43 humidity 50.0 10 > th dose independent rect. 17 2
579 434.55 radiation 1.0 720 < th dose independent sin 15 NA
593 434.68 wind 1.0 90 > th dose dependent rect. 17 1
606 434.76 temperature 30.0 30 < th dose dependent rect. 19 7
609 434.77 temperature 10.0 10 > th dose independent rect. 18 1
612 434.77 atmosphere 1010.0 10 < th dose independent rect. 18 1
617 434.77 precipitation 0.1 10 < th dose independent rect. 18 1
619 434.77 precipitation 0.1 10 < th dose dependent rect. 18 1
655 435.14 temperature 25.0 270 < th dose independent sin 17 NA
661 435.18 wind 9.0 90 < th dose independent rect. 18 23
680 435.35 wind 7.0 43200 > th dose independent rect. 19 1
691 435.43 atmosphere 995.0 10 > th dose independent rect. 18 1
715 435.59 wind 1.0 10 > th dose dependent rect. 17 2
717 435.61 wind 7.0 43200 < th dose independent rect. 19 1
732 435.70 radiation 1.0 270 > th dose independent sin 18 NA
771 436.01 temperature 10.0 90 > th dose independent rect. 17 1
778 436.01 temperature 10.0 90 > th dose independent rect. 18 23
783 436.04 radiation 1.0 30 > th dose dependent rect. 18 1
796 436.08 radiation 1.0 720 > th dose independent sin 14 NA
812 436.19 atmosphere 995.0 30 > th dose dependent rect. 19 7
840 436.39 temperature 25.0 270 > th dose independent sin 17 NA
843 436.39 radiation 1.0 720 > th dose independent rect. 7 12
878 436.66 wind 7.0 43200 > th dose dependent rect. 16 10
927 436.94 temperature 30.0 270 < th dose dependent rect. 12 13
952 437.13 wind 9.0 30 < th dose independent rect. 19 7
954 437.15 precipitation 0.1 30 < th dose independent rect. 2 17
958 437.15 precipitation 0.1 30 < th dose dependent rect. 2 17
959 437.16 wind 9.0 90 < th dose independent rect. 17 1
960 437.16 temperature 10.0 30 > th dose independent rect. 19 7
961 437.16 temperature 30.0 30 < th dose independent rect. 19 7
962 437.16 humidity 50.0 30 > th dose independent rect. 19 7
964 437.16 atmosphere 995.0 30 > th dose independent rect. 19 7
965 437.16 radiation 1.0 30 < th dose independent rect. 19 7
972 437.16 temperature 10.0 30 > th dose independent rect. 2 17
974 437.16 atmosphere 1015.0 30 < th dose independent rect. 2 17
975 437.16 radiation 10.0 30 < th dose dependent rect. 19 7
981 437.17 wind 7.0 43200 > th dose independent rect. 16 14
993 437.19 wind 7.0 43200 > th dose dependent rect. 16 13
996 437.21 wind 7.0 43200 < th dose independent rect. 16 14