Os03g0758500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os03g0758500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.22 | 0.507 | 9 | -0.228 | 2.2 | 1.73 | -1.31 | -4.56 | -0.0286 | 13.7 | 24.62 | 1118 | -- | -- |
| 129.03 | 0.529 | 8.91 | 0.761 | 2.05 | 1.12 | -0.97 | -- | 0.0344 | 13.8 | 22.19 | 8108 | -- | -- |
| 122.6 | 0.516 | 8.99 | -0.23 | 2.18 | 1.71 | -- | -4.31 | -0.0115 | 13.7 | 25 | 1140 | -- | -- |
| 133.13 | 0.537 | 8.93 | 0.658 | 2.01 | 1.16 | -- | -- | -0.0235 | 13.9 | 21.99 | 8175 | -- | -- |
| 247.53 | 0.737 | 8.98 | 0.138 | -- | 2.75 | -- | -5.33 | -0.0435 | -- | 24.5 | 1721 | -- | -- |
| 173.63 | 0.618 | 8.83 | 1.23 | 1.92 | -- | -1.24 | -- | 0.41 | 13.9 | -- | -- | -- | -- |
| 179.54 | 0.627 | 8.84 | 1.2 | 1.92 | -- | -- | -- | 0.403 | 13.9 | -- | -- | -- | -- |
| 231.01 | 0.711 | 8.95 | 0.607 | -- | 2.67 | -- | -- | -0.067 | -- | 20.75 | 6088 | -- | -- |
| 138.58 | 0.548 | 8.98 | -- | 1.93 | 1.47 | -- | -- | -0.161 | 13.9 | 12.4 | 33377 | -- | -- |
| 400.87 | 0.936 | 8.86 | 1.12 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 217.28 | 0.69 | 8.87 | -- | 1.89 | -- | -- | -- | 0.27 | 13.9 | -- | -- | -- | -- |
| 240.36 | 0.724 | 8.97 | -- | -- | 2.79 | -- | -- | -0.151 | -- | 20.75 | 6088 | -- | -- |
| 433.81 | 0.972 | 8.88 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 2 | 113.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 113.38 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 7 | 113.76 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 8 | 113.94 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 9 | 113.99 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 11 | 114.05 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 14 | 114.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 18 | 114.22 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 20 | 114.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 25 | 114.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 73 | 115.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 79 | 115.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 88 | 116.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 90 | 116.08 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 117 | 116.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 127 | 116.60 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 138 | 116.74 | wind | 7 | 43200 | > th | dose independent | sin | 20 | NA |
| 148 | 116.97 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 180 | 117.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 181 | 117.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 182 | 117.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 199 | 117.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 201 | 117.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 239 | 117.71 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 265 | 117.89 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 331 | 118.46 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 339 | 118.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 340 | 118.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 355 | 118.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 364 | 118.58 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 403 | 118.79 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 406 | 118.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 414 | 118.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 425 | 118.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 468 | 119.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 477 | 119.14 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 603 | 119.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 634 | 119.94 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 644 | 119.97 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 650 | 119.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 656 | 120.02 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 687 | 120.14 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 704 | 120.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 767 | 120.41 | wind | 7 | 43200 | > th | dose dependent | sin | 17 | NA |
| 780 | 120.46 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 811 | 120.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 20 |
| 952 | 120.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 962 | 120.82 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 970 | 120.83 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 985 | 120.85 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 8 |