Os06g0721800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os06g0721800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.98 | 0.502 | 9.35 | -0.295 | 1.69 | -0.906 | 2.2 | -2.27 | -0.0837 | 23.1 | 0.1212 | 95 | -- | -- |
| 126.06 | 0.523 | 9.33 | -0.38 | 2.36 | -1.4 | 0.381 | -- | -0.0287 | 23.1 | 0.000193 | 74 | -- | -- |
| 116.65 | 0.503 | 9.35 | -0.392 | 1.68 | -0.899 | -- | -0.528 | -0.0916 | 23 | 0.05 | 76 | -- | -- |
| 118.2 | 0.506 | 9.36 | -0.409 | 1.71 | -0.906 | -- | -- | -0.0956 | 22.9 | 0.05137 | 76 | -- | -- |
| 141.77 | 0.558 | 9.31 | -0.359 | -- | 0.603 | -- | -0.588 | -0.0561 | -- | 21.95 | 9 | -- | -- |
| 131.31 | 0.537 | 9.33 | -0.352 | 0.848 | -- | 0.148 | -- | -0.0469 | 20.9 | -- | -- | -- | -- |
| 131.38 | 0.537 | 9.33 | -0.358 | 0.846 | -- | -- | -- | -0.0472 | 21 | -- | -- | -- | -- |
| 142.49 | 0.556 | 9.31 | -0.352 | -- | 0.618 | -- | -- | -0.0572 | -- | 23.69 | 2 | -- | -- |
| 123.4 | 0.517 | 9.36 | -- | 1.73 | -0.894 | -- | -- | -0.0756 | 22.9 | 0.05029 | 76 | -- | -- |
| 172.48 | 0.614 | 9.31 | -0.357 | -- | -- | -- | -- | -0.0526 | -- | -- | -- | -- | -- |
| 134.75 | 0.543 | 9.32 | -- | 0.847 | -- | -- | -- | -0.00734 | 20.9 | -- | -- | -- | -- |
| 145.76 | 0.562 | 9.3 | -- | -- | 0.619 | -- | -- | -0.0182 | -- | 23.69 | 2 | -- | -- |
| 175.84 | 0.619 | 9.3 | -- | -- | -- | -- | -- | -0.013 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 2 | 106.54 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 3 | 106.57 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 4 | 106.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 20 | 107.70 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 23 | 107.83 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 11 |
| 40 | 108.41 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 54 | 108.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 13 |
| 89 | 109.42 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 94 | 109.48 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 97 | 109.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 98 | 109.53 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 114 | 109.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 131 | 109.96 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 143 | 110.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 144 | 110.22 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 13 |
| 151 | 110.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 154 | 110.40 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 5 |
| 160 | 110.45 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 161 | 110.49 | wind | 7.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 209 | 110.83 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 220 | 110.94 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 236 | 111.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 245 | 111.25 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 19 | 10 |
| 246 | 111.25 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 256 | 111.33 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 258 | 111.34 | radiation | 1.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 280 | 111.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 281 | 111.58 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 282 | 111.58 | temperature | 30.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 283 | 111.58 | humidity | 50.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 285 | 111.58 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 10 |
| 286 | 111.58 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 10 |
| 291 | 111.58 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 293 | 111.58 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 295 | 111.59 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 19 | 10 |
| 303 | 111.63 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 306 | 111.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 310 | 111.65 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 315 | 111.71 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 14 |
| 316 | 111.71 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 341 | 111.94 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 351 | 111.99 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 8 |
| 381 | 112.18 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 384 | 112.21 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 385 | 112.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 11 |
| 408 | 112.34 | radiation | 10.0 | 270 | > th | dose independent | sin | 7 | NA |
| 436 | 112.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 475 | 112.62 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 479 | 112.63 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 485 | 112.67 | radiation | 30.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 523 | 112.84 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 22 | 17 |
| 540 | 112.93 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 546 | 112.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 561 | 113.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 562 | 113.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 565 | 113.02 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 584 | 113.11 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 23 |
| 592 | 113.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 625 | 113.19 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 633 | 113.22 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 644 | 113.25 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 674 | 113.37 | wind | 7.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 686 | 113.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 689 | 113.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 692 | 113.44 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 698 | 113.45 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 701 | 113.47 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 14 |
| 705 | 113.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 706 | 113.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 707 | 113.49 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 13 |
| 716 | 113.50 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 18 |
| 727 | 113.54 | radiation | 30.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 734 | 113.57 | humidity | 80.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 771 | 113.68 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 777 | 113.71 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 784 | 113.73 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 856 | 113.89 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 858 | 113.90 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 885 | 113.92 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 890 | 113.92 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 928 | 113.95 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 936 | 113.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 937 | 113.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 942 | 113.98 | temperature | 20.0 | 270 | > th | dose independent | sin | 15 | NA |
| 950 | 114.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 953 | 114.01 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 968 | 114.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 993 | 114.08 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 19 | 10 |