BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0468900 Os05g0468900|Os05g0468900
(194 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0468900 Zinc finger, RING-type domain containing protein 258 1e-69
Os01g0830900 122 1e-28
Os01g0213400 Zinc finger, RING-type domain containing protein 82 2e-16
Os01g0212700 Zinc finger, RING-type domain containing protein 71 6e-13
Os02g0248900 69 2e-12
Os02g0249101 68 3e-12
Os01g0213000 Zinc finger, RING-type domain containing protein 68 4e-12
Os03g0398600 Zinc finger, RING-type domain containing protein 68 5e-12
Os03g0149800 Similar to RING-H2 finger protein ATL1D 67 6e-12
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 67 6e-12
Os01g0213200 67 7e-12
Os06g0155200 66 1e-11
Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-) 66 2e-11
Os02g0561400 66 2e-11
Os02g0561000 66 2e-11
Os02g0560600 66 2e-11
Os02g0560200 66 2e-11
Os12g0432600 Zinc finger, RING-type domain containing protein 65 2e-11
Os12g0620100 65 2e-11
Os01g0822800 Similar to RING-H2 finger protein ATL3C 65 2e-11
Os02g0820200 Zinc finger, RING-type domain containing protein 65 3e-11
Os06g0534900 Zinc finger, RING-type domain containing protein 65 4e-11
Os06g0167200 Similar to RING-H2 finger protein ATL1R (RING-... 64 5e-11
Os04g0450400 Zinc finger, RING-type domain containing protein 64 6e-11
Os12g0596200 Similar to RING-H2 protein 64 6e-11
Os06g0540400 Zinc finger, RING-type domain containing protein 64 8e-11
Os12g0433100 Zinc finger, RING-type domain containing protein 64 9e-11
>Os05g0468900 Zinc finger, RING-type domain containing protein
Length = 194
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/194 (70%), Positives = 137/194 (70%)
Query: 1 MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGRXXXXXXXXXXXXXXXXXXXXXXRWACHR 60
MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGR RWACHR
Sbjct: 1 MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGRAVYLLVGLLVAVVVFVALCLYLRWACHR 60
Query: 61 YTPDPEXXXXXXXXXXXXXXXXXXMHGLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVD 120
YTPDPE MHGLDAEAIGGLPVTLYRPRDSSSPPA VD
Sbjct: 61 YTPDPEASSSSSAAGAAGAAAAASMHGLDAEAIGGLPVTLYRPRDSSSPPAGKGGGGGVD 120
Query: 121 DDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSXXXXXXXXXX 180
DDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRS
Sbjct: 121 DDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSLLLAAAATAA 180
Query: 181 KPDVNGGDDDDSAV 194
KPDVNGGDDDDSAV
Sbjct: 181 KPDVNGGDDDDSAV 194
>Os01g0830900
Length = 189
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 15 MRWRYGDVDDSNFAVHGRXXXXXXXXXXXXXXXXXXXXXXRWACH--RY----TPDPEXX 68
+RWRYGDVDD NFAV GR RWACH RY TP P
Sbjct: 14 LRWRYGDVDDGNFAVRGRAVPLLVALLFVLVCFVAVSLYLRWACHCHRYGRDTTPMPATT 73
Query: 69 XXXXXXXXXXXX---XXXXMHGLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAA 125
+ GLD I +PV LYR A DD AA
Sbjct: 74 SSGFSSSHAAATAPGSASSVTGLDDATIASMPVALYR--------AVASAAGDGDDGGAA 125
Query: 126 QCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSXXXXXXXXXXKPDVN 185
QCSIC+ GEKVKALP CGH FHP+CVDAWLRS+PSCPLCRS KPDV
Sbjct: 126 QCSICLGEFEEGEKVKALPLCGHGFHPECVDAWLRSRPSCPLCRS-SLLPAAATTKPDVA 184
Query: 186 GGD 188
G D
Sbjct: 185 GSD 187
>Os01g0213400 Zinc finger, RING-type domain containing protein
Length = 237
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 86 HGLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPP 145
GLDA A+ LPVT YR ++ AA C++C+S L GEKV+ LP
Sbjct: 89 RGLDASALAALPVTAYR-KNGGGGGGGEGSNRGGPGATAADCAVCLSELADGEKVRELPN 147
Query: 146 CGHCFHPDCVDAWLRSQPSCPLCRS 170
C H FH +CVDAWLRS+ +CPLCR+
Sbjct: 148 CRHVFHVECVDAWLRSRTTCPLCRA 172
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 86 HGLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPP 145
HG+ A AI LP Y +++ A C++C+ + AGEKV+ LP
Sbjct: 72 HGMSAAAIAALPTFGYEASAAAA--------------AALDCAVCLGQVDAGEKVRQLPK 117
Query: 146 CGHCFHPDCVDAWLRSQPSCPLCRSXXXX-XXXXXXKPDVNGGDDDDS 192
CGH FH +CVDAWLR+ +CP+CR+ K +GG D+
Sbjct: 118 CGHLFHAECVDAWLRAHSTCPMCRAAVEGPATAAIAKKASSGGGATDT 165
>Os02g0248900
Length = 195
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 87 GLDAEAIGGLPVTLY-RPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPP 145
GL A AI LP + Y RPR PA CS+C+ + GE V+ LP
Sbjct: 95 GLTAAAIDALPASEYERPRGGGGDPA---------------CSVCLEDVRGGETVRWLPA 139
Query: 146 CGHCFHPDCVDAWLRSQPSCPLCRS 170
CGH +H C+DAWLRS+ +CPLCRS
Sbjct: 140 CGHLYHAACIDAWLRSRTTCPLCRS 164
>Os02g0249101
Length = 177
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 87 GLDAEAIGGLPVTLYRPRD--SSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALP 144
GL A A+ LP +YR + ++P AQC++C+S + GE V+ LP
Sbjct: 74 GLSASAVATLPSFVYRREEWAEAAPRGDGSGSGRGGGGGWAQCAVCLSIVQEGETVRQLP 133
Query: 145 PCGHCFHPDCVDAWLRSQPSCPLCRS 170
C H FH C+D WL S +CPLCR+
Sbjct: 134 ACKHLFHVGCIDMWLHSHSTCPLCRA 159
>Os01g0213000 Zinc finger, RING-type domain containing protein
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 11/83 (13%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
LD+ AI LP + PR S AA+C++C+ A+ GE V+ALP C
Sbjct: 73 LDSAAIARLPCFVLPPRRGGS-----------AAAAAAECAVCLGAVEEGETVRALPCCP 121
Query: 148 HCFHPDCVDAWLRSQPSCPLCRS 170
H FH CVDAWLR +P+CPLCR+
Sbjct: 122 HAFHARCVDAWLRLRPTCPLCRA 144
>Os03g0398600 Zinc finger, RING-type domain containing protein
Length = 267
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 124 AAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCR 169
AA C++CI+ L AGE + LP CGH FH +CVD WLRS +CPLCR
Sbjct: 88 AADCAVCITELAAGESARVLPRCGHGFHVECVDMWLRSNSTCPLCR 133
>Os03g0149800 Similar to RING-H2 finger protein ATL1D
Length = 300
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GLD + + LPV YR R +S A +C++C+S V E++K LP C
Sbjct: 94 GLDPDVVAALPVVKYR-RAASGKSA-----------SPQECAVCLSEFVRDERLKLLPSC 141
Query: 147 GHCFHPDCVDAWLRSQPSCPLCRS 170
H FH DC+D WL SCPLCR+
Sbjct: 142 SHAFHIDCIDTWLHHNVSCPLCRT 165
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GL A A+ LPVT+Y + P A ++A +C++C+S + GEKV+ LP C
Sbjct: 84 GLPAAALRALPVTVY-----AKPAAAR-------GEEALECAVCLSEVADGEKVRMLPKC 131
Query: 147 GHCFHPDCVDAWLRSQPSCPLCRS 170
H FH +C+D W S +CPLCR+
Sbjct: 132 DHGFHVECIDMWFHSHDTCPLCRA 155
>Os01g0213200
Length = 233
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 86 HGLDAEAIGGLPVTLY-RPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALP 144
GLDA AI LP Y R RD + +C++C+SA+ GE V+ LP
Sbjct: 82 FGLDAAAIARLPSFPYVRARDDGE-------VSDSASSSSVECAVCLSAVDEGETVRQLP 134
Query: 145 PCGHCFHPDCVDAWLRSQPSCPLCR 169
CGH FH +C+D WL S+ SCP+CR
Sbjct: 135 ACGHVFHRECIDMWLSSRASCPVCR 159
>Os06g0155200
Length = 221
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 125 AQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRS 170
AQCSIC+ GE V+ LP CGH FH CVD WLR+ +CPLCR+
Sbjct: 163 AQCSICLGLARVGEAVRRLPSCGHLFHAGCVDEWLRAHATCPLCRA 208
>Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 325
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
+D E + LPVT+Y S S A +DD +C++C++ L GE+ + LP CG
Sbjct: 99 VDPEVLRSLPVTVY----SRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCG 154
Query: 148 HCFHPDCVDAWLRSQPSCPLCR 169
H FH +CVD WL S +CPLCR
Sbjct: 155 HGFHAECVDMWLGSHSTCPLCR 176
>Os02g0561400
Length = 314
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
+D E + LPVT+Y S S A +DD +C++C++ L GE+ + LP CG
Sbjct: 88 VDPEVLRSLPVTVY----SRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCG 143
Query: 148 HCFHPDCVDAWLRSQPSCPLCR 169
H FH +CVD WL S +CPLCR
Sbjct: 144 HGFHAECVDMWLGSHSTCPLCR 165
>Os02g0561000
Length = 314
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
+D E + LPVT+Y S S A +DD +C++C++ L GE+ + LP CG
Sbjct: 88 VDPEVLRSLPVTVY----SRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCG 143
Query: 148 HCFHPDCVDAWLRSQPSCPLCR 169
H FH +CVD WL S +CPLCR
Sbjct: 144 HGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560600
Length = 314
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
+D E + LPVT+Y S S A +DD +C++C++ L GE+ + LP CG
Sbjct: 88 VDPEVLRSLPVTVY----SRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCG 143
Query: 148 HCFHPDCVDAWLRSQPSCPLCR 169
H FH +CVD WL S +CPLCR
Sbjct: 144 HGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560200
Length = 314
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
+D E + LPVT+Y S S A +DD +C++C++ L GE+ + LP CG
Sbjct: 88 VDPEVLRSLPVTVY----SRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCG 143
Query: 148 HCFHPDCVDAWLRSQPSCPLCR 169
H FH +CVD WL S +CPLCR
Sbjct: 144 HGFHAECVDMWLGSHSTCPLCR 165
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 14/84 (16%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GL E I +P YR S S AQC++CI+A+ G+ V+ LP C
Sbjct: 97 GLSQEDIEAIPAFEYRRGSSGS--------------GVAQCAVCIAAVKDGDTVRRLPAC 142
Query: 147 GHCFHPDCVDAWLRSQPSCPLCRS 170
GH FH CVD WLR +CP+CR+
Sbjct: 143 GHAFHAPCVDGWLRDHATCPMCRA 166
>Os12g0620100
Length = 153
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GLD + P T+Y SS+ VD C++C++ G++++ LP C
Sbjct: 52 GLDEAVLAEYPTTVYSCSSSSAAVPEEAAAAAVDAGDGTGCAVCLAEYEDGDELRRLPGC 111
Query: 147 GHCFHPDCVDAWLRSQPSCPLCRS 170
GH FH CVD WLR +P+CP+CRS
Sbjct: 112 GHAFHRRCVDEWLRRRPTCPVCRS 135
>Os01g0822800 Similar to RING-H2 finger protein ATL3C
Length = 208
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 88 LDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPCG 147
L A+ +P+ +Y SP A A C+IC+ GEKV+ LP CG
Sbjct: 96 LKKRALRSIPIEVYGGGGGGSPAAA-----------AEVCAICLGEFADGEKVRVLPRCG 144
Query: 148 HCFHPDCVDAWLRSQPSCPLCRSXXXXXXXXXXKP 182
H FH CVD WL S SCP CR KP
Sbjct: 145 HGFHVRCVDTWLVSHDSCPTCRGSVLHGATTKHKP 179
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 16/86 (18%)
Query: 87 GLDAEAIGGLPVTLYRP--RDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALP 144
GL+ AI LP YR +D+++ +++C++CIS E+V+ LP
Sbjct: 114 GLEEAAIQSLPAFRYRKAIKDTTA--------------DSSECAVCISEFQEEERVRLLP 159
Query: 145 PCGHCFHPDCVDAWLRSQPSCPLCRS 170
C H FH DC+D WL+ +CPLCR+
Sbjct: 160 SCLHVFHVDCIDTWLQGNANCPLCRA 185
>Os06g0534900 Zinc finger, RING-type domain containing protein
Length = 412
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GL A+AI LP Y P + A C++C+ +VAGE V+ LP C
Sbjct: 112 GLAAQAIDALPAFAYEPPAAD----VEDGGEGKPRGGGALCAVCLEDVVAGETVRRLPSC 167
Query: 147 GHCFHPDCVDAWLRSQPSCPLCR 169
GH FH DC+D WL + +CPLCR
Sbjct: 168 GHLFHVDCIDMWLHAHRTCPLCR 190
>Os06g0167200 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 363
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GLD + I LPV +YR + C++C+ ++++ LP C
Sbjct: 94 GLDQDVIDALPVFMYR---EVVVGVGGGGGAGGGAKEPFDCAVCLCEFAGDDRLRLLPVC 150
Query: 147 GHCFHPDCVDAWLRSQPSCPLCR 169
GH FH DC+D WL S +CPLCR
Sbjct: 151 GHAFHIDCIDTWLLSNSTCPLCR 173
>Os04g0450400 Zinc finger, RING-type domain containing protein
Length = 415
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 87 GLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPPC 146
GLD AI + T YR AA CS+C+ GE V+ LP C
Sbjct: 176 GLDEAAIDSIAATRYR--------------AGAGLLGAADCSVCLGEFQDGELVRLLPKC 221
Query: 147 GHCFHPDCVDAWLRSQPSCPLCRS 170
GH FH C+D WLR+ +CPLCRS
Sbjct: 222 GHAFHVPCIDTWLRAHVNCPLCRS 245
>Os12g0596200 Similar to RING-H2 protein
Length = 310
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 86 HGLDAEAIGGLPVTLYRPRDSSSPPAXXXXXXXVDDDQAAQCSICISALVAGEKVKALPP 145
+GLD AI LP Y SS+ A D A C++C+ G++++ALP
Sbjct: 65 YGLDDAAIKSLPSAQYL--KSSAMAARGGGGGGGADTAARDCAVCLLEFADGDELRALPL 122
Query: 146 CGHCFHPDCVDAWLRSQPSCPLCRS 170
C H FH DC+D WLR+ SCPLCR+
Sbjct: 123 CAHAFHADCIDVWLRAHASCPLCRA 147
>Os06g0540400 Zinc finger, RING-type domain containing protein
Length = 168
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 122 DQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRS 170
+ AAQCS+C+ A+ GE V+ LP C H +H +C+D WL S +CPLCR+
Sbjct: 99 EGAAQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLASHATCPLCRT 147
>Os12g0433100 Zinc finger, RING-type domain containing protein
Length = 212
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 123 QAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRS 170
+A QC++CI + GE V+ LP CGH FH C+D WLR+ +CP+CR+
Sbjct: 151 EAEQCAVCIGVVRRGETVRRLPACGHAFHAACIDGWLRAHATCPVCRA 198
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,102,988
Number of extensions: 190787
Number of successful extensions: 720
Number of sequences better than 1.0e-10: 55
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 56
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)