Os05g0468900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0468900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.22 | 0.86 | 8.51 | 0.924 | 1.1 | 3.48 | -0.755 | 3.17 | 0.201 | 7.58 | 0.817 | 1433 | -- | -- |
| 341.41 | 0.861 | 8.51 | 1.36 | 1.14 | 3.29 | -0.671 | -- | 0.291 | 7.54 | 1.373 | 1429 | -- | -- |
| 336.8 | 0.855 | 8.51 | 0.904 | 1.1 | 3.48 | -- | 3.18 | 0.201 | 7.53 | 0.8178 | 1433 | -- | -- |
| 339.67 | 0.858 | 8.49 | 1.23 | 1.04 | 2.98 | -- | -- | 0.321 | 6.88 | 1.351 | 1411 | -- | -- |
| 375.81 | 0.903 | 8.54 | 0.862 | -- | 3.51 | -- | 3.23 | 0.136 | -- | 0.83 | 1336 | -- | -- |
| 458.24 | 1 | 8.56 | 0.642 | 1.09 | -- | -0.611 | -- | -0.151 | 7.76 | -- | -- | -- | -- |
| 459.31 | 1 | 8.56 | 0.627 | 1.09 | -- | -- | -- | -0.15 | 7.78 | -- | -- | -- | -- |
| 368.13 | 0.894 | 8.51 | 1.2 | -- | 3.05 | -- | -- | 0.285 | -- | 1.661 | 1301 | -- | -- |
| 366.96 | 0.892 | 8.48 | -- | 1.16 | 2.89 | -- | -- | 0.195 | 6.69 | 1.67 | 1411 | -- | -- |
| 523.43 | 1.07 | 8.59 | 0.64 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 469.66 | 1.01 | 8.58 | -- | 1.09 | -- | -- | -- | -0.22 | 7.74 | -- | -- | -- | -- |
| 394.6 | 0.925 | 8.51 | -- | -- | 2.82 | -- | -- | 0.0956 | -- | 1.68 | 1287 | -- | -- |
| 534.23 | 1.08 | 8.6 | -- | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 321.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 3 | 321.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 12 | 324.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 13 | 324.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 15 | 324.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 17 | 324.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 44 | 325.63 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 46 | 325.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 70 | 326.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 97 | 327.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 99 | 327.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 111 | 327.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 118 | 327.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 147 | 327.72 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 158 | 327.83 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 188 | 328.23 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 189 | 328.24 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 200 | 328.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 280 | 330.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 334 | 332.85 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 373 | 334.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 383 | 334.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 392 | 334.57 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 415 | 335.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 416 | 335.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 424 | 335.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 442 | 335.52 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 446 | 335.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 447 | 335.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 466 | 336.00 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 473 | 336.24 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 495 | 336.55 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 501 | 336.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 504 | 336.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 508 | 336.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 517 | 336.69 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 549 | 336.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 551 | 336.81 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 554 | 336.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 584 | 336.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 600 | 337.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 602 | 337.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 604 | 337.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 614 | 337.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 637 | 337.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 651 | 337.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 652 | 337.26 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 680 | 337.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 697 | 337.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 711 | 337.64 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 735 | 337.78 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 774 | 338.03 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 820 | 338.03 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 857 | 338.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 936 | 338.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 978 | 338.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 9 |