BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0659800 Os04g0659800|016-072-G05
(81 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0659800 Similar to Amino acid transporter b (Fragment) 166 5e-42
Os01g0882800 Similar to Amino acid carrier (Fragment) 95 1e-20
Os12g0181600 Amino acid/polyamine transporter II family pro... 94 2e-20
Os12g0181500 Similar to Amino acid carrier (Fragment) 94 2e-20
Os12g0195100 Similar to Amino acid carrier (Fragment) 93 5e-20
Os06g0556000 Similar to Amino acid carrier (Fragment) 92 8e-20
Os05g0424000 Similar to Amino acid carrier (Fragment) 92 9e-20
Os11g0195600 Similar to Amino acid carrier (Fragment) 90 4e-19
Os04g0490900 Amino acid/polyamine transporter II family pro... 87 4e-18
Os01g0878400 Amino acid/polyamine transporter II family pro... 86 5e-18
Os07g0134000 Similar to Amino acid permease-like protein (F... 86 8e-18
Os06g0228600 Similar to Amino acid carrier 83 4e-17
Os01g0878700 Amino acid/polyamine transporter II family pro... 82 9e-17
Os02g0102200 Similar to Transmembrane amino acid transporte... 76 5e-15
Os12g0194900 Similar to Amino acid carrier (Fragment) 75 1e-14
Os12g0203400 73 5e-14
Os04g0470700 Amino acid transporter, transmembrane family p... 70 3e-13
Os06g0228800 Amino acid/polyamine transporter II family pro... 70 5e-13
AY224447 69 8e-13
>Os04g0659800 Similar to Amino acid transporter b (Fragment)
Length = 81
Score = 166 bits (419), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 1 MAPQLPLEVASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPI 60
MAPQLPLEVASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPI
Sbjct: 1 MAPQLPLEVASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPI 60
Query: 61 AMVCFAFVTYISAFLLSHCST 81
AMVCFAFVTYISAFLLSHCST
Sbjct: 61 AMVCFAFVTYISAFLLSHCST 81
>Os01g0882800 Similar to Amino acid carrier (Fragment)
Length = 488
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 52/70 (74%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
A + DDDG P+R G +WT AHIITAVIG GVL+L W++AQLGWVAGP MV F+ VT
Sbjct: 28 AGSKLFDDDGRPRRNGTMWTASAHIITAVIGSGVLSLGWAIAQLGWVAGPAVMVLFSLVT 87
Query: 70 YISAFLLSHC 79
Y ++ LLS C
Sbjct: 88 YYTSSLLSDC 97
>Os12g0181600 Amino acid/polyamine transporter II family protein
Length = 475
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Query: 6 PLEVA-------SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAG 58
P+EV+ A LDDDG +RTG WT AHIITAVIG GVL+L+W++AQLGWVAG
Sbjct: 10 PMEVSVEAGNAGEAAWLDDDGRARRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAG 69
Query: 59 PIAMVCFAFVTYISAFLLSHC 79
P M+ FAFV Y ++ LL+ C
Sbjct: 70 PAVMLLFAFVIYYTSTLLAEC 90
>Os12g0181500 Similar to Amino acid carrier (Fragment)
Length = 475
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Query: 6 PLEVA-------SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAG 58
P+EV+ A LDDDG +RTG WT AHIITAVIG GVL+L+W++AQLGWVAG
Sbjct: 10 PMEVSVEAGNAGEAAWLDDDGRARRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAG 69
Query: 59 PIAMVCFAFVTYISAFLLSHC 79
P M+ FAFV Y ++ LL+ C
Sbjct: 70 PAVMLLFAFVIYYTSTLLAEC 90
>Os12g0195100 Similar to Amino acid carrier (Fragment)
Length = 468
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 6 PLEV-------ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAG 58
PLEV A + LDDDG P+RTG WT AHIITAVIG GVL+L W+ AQLGWV G
Sbjct: 6 PLEVSLEAGNQADSALLDDDGRPRRTGTFWTASAHIITAVIGSGVLSLPWATAQLGWVGG 65
Query: 59 PIAMVCFAFVTYISAFLLSHC 79
P MV F VTY +A L + C
Sbjct: 66 PAVMVVFGGVTYFTATLQAEC 86
>Os06g0556000 Similar to Amino acid carrier (Fragment)
Length = 487
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 53/70 (75%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
A +DDDG +RTGN+WT AHIITAVIG GVL+L+W+ AQLGWV GP+ ++ FA +T
Sbjct: 29 AGGEDVDDDGKQRRTGNVWTASAHIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFALIT 88
Query: 70 YISAFLLSHC 79
Y ++ LL+ C
Sbjct: 89 YYTSGLLADC 98
>Os05g0424000 Similar to Amino acid carrier (Fragment)
Length = 496
Score = 92.0 bits (227), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
A + DDDG +RTG +WT AHIITAVIG GVL+L W++AQLGWVAGP M+ F+FVT
Sbjct: 29 AGSKLYDDDGRLKRTGTMWTASAHIITAVIGSGVLSLGWAIAQLGWVAGPAVMLLFSFVT 88
Query: 70 YISAFLLSHC 79
Y ++ LL+ C
Sbjct: 89 YYTSALLADC 98
>Os11g0195600 Similar to Amino acid carrier (Fragment)
Length = 476
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 16 DDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFL 75
DDDG +R G +WT AHIITAVIG GVL+L+W++AQLGWVAGP M+ FAFV Y ++ L
Sbjct: 28 DDDGRARRMGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMLLFAFVIYYTSTL 87
Query: 76 LSHC 79
L+ C
Sbjct: 88 LAEC 91
>Os04g0490900 Amino acid/polyamine transporter II family protein
Length = 411
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
+ A +D DG P+RTG +WT AHIITAVIG GVL+L+W VAQLGWVAGP M+ F V
Sbjct: 19 SKAAGVDGDGEPRRTGTMWTASAHIITAVIGSGVLSLAWGVAQLGWVAGPAVMLLFGAVI 78
Query: 70 YISAFLLSHC 79
Y + LL C
Sbjct: 79 YCCSVLLVEC 88
>Os01g0878400 Amino acid/polyamine transporter II family protein
Length = 465
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 54/69 (78%)
Query: 11 SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTY 70
+AP+ + G +RTG +WT AHI+TAVIG GVLAL+WSVAQLGWVAGP+A+ FA VTY
Sbjct: 5 AAPEDVESGEHERTGTVWTATAHIVTAVIGSGVLALAWSVAQLGWVAGPLALAGFACVTY 64
Query: 71 ISAFLLSHC 79
++ LL++
Sbjct: 65 YTSTLLANA 73
>Os07g0134000 Similar to Amino acid permease-like protein (Fragment)
Length = 487
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%)
Query: 10 ASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVT 69
A P LDDDG +RTG L T AHIITAVIG GVL+L+W++AQLGWV GP +V F+ +T
Sbjct: 26 ADRPDLDDDGREKRTGTLVTASAHIITAVIGSGVLSLAWAIAQLGWVIGPAVLVAFSVIT 85
Query: 70 YISAFLLSHC 79
+ + LL+ C
Sbjct: 86 WFCSSLLADC 95
>Os06g0228600 Similar to Amino acid carrier
Length = 484
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 47/61 (77%)
Query: 19 GHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLSH 78
G P+RTG WT AHI+TAV+G GVL+L+WS AQLGWVAGP +V FA +TY ++ LL+
Sbjct: 36 GKPKRTGTEWTASAHIVTAVVGSGVLSLAWSTAQLGWVAGPATLVVFAVITYYTSVLLAD 95
Query: 79 C 79
C
Sbjct: 96 C 96
>Os01g0878700 Amino acid/polyamine transporter II family protein
Length = 466
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 15 LDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAF 74
+DDDG RTG +WT H ITAVIG GVLAL WSVAQ+GWV GPIA+V A++TY +A
Sbjct: 13 VDDDGRV-RTGTVWTATTHAITAVIGSGVLALPWSVAQMGWVLGPIALVVCAYITYYTAV 71
Query: 75 LLSHC 79
LL C
Sbjct: 72 LLCDC 76
>Os02g0102200 Similar to Transmembrane amino acid transporter protein
Length = 518
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 19 GHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLSH 78
G +R G +WT +HIITAVIG GVL+L+W++AQLGWV GP M+ FA V Y ++ LL+
Sbjct: 67 GRAKRRGTVWTAASHIITAVIGSGVLSLAWAIAQLGWVVGPTVMLLFAAVIYFTSNLLAD 126
Query: 79 C 79
C
Sbjct: 127 C 127
>Os12g0194900 Similar to Amino acid carrier (Fragment)
Length = 468
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 9 VASAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFV 68
V A +DD +R G +WT +HI+ AV+G GVLAL+W+VAQLGWV GP+ +V F+ V
Sbjct: 7 VYDAEAVDDH---ERQGTVWTATSHIVAAVVGSGVLALAWTVAQLGWVVGPLVLVGFSCV 63
Query: 69 TYISAFLLSHC 79
TY ++ LL++C
Sbjct: 64 TYYTSTLLANC 74
>Os12g0203400
Length = 72
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 11 SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTY 70
+AP+ + G +R G +W AHI+TAVIG GVLAL+WSVAQLGWVAGP+A+ T
Sbjct: 5 AAPEDGESGEHERKGTVWAATAHIVTAVIGSGVLALAWSVAQLGWVAGPLALAGEGTGTD 64
Query: 71 ISAFLLSH 78
+ +S
Sbjct: 65 LDRVDMSR 72
>Os04g0470700 Amino acid transporter, transmembrane family protein
Length = 466
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 23 RTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLSHC 79
R+G WT AH+ITAVIG GVL+L+WSVAQLGW+AGP M+ FA VT + + L + C
Sbjct: 29 RSGTEWTAAAHVITAVIGSGVLSLAWSVAQLGWLAGPGMMLVFAAVTALQSALFADC 85
>Os06g0228800 Amino acid/polyamine transporter II family protein
Length = 507
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 11 SAPKLDDDGHPQRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTY 70
S + P+++G +WT AHI+ +IG VLA++W+ AQLGWVAGP +V + VTY
Sbjct: 32 SPAREKTRRRPEKSGTVWTATAHIVALLIGSSVLAVAWTFAQLGWVAGPAVVVALSVVTY 91
Query: 71 ISAFLLSHC 79
S+ LL+ C
Sbjct: 92 YSSALLADC 100
>AY224447
Length = 305
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 22 QRTGNLWTCVAHIITAVIGCGVLALSWSVAQLGWVAGPIAMVCFAFVTYISAFLLSHC 79
+RTG L T AHIITAVIG GVL+L+W++AQLGWV GP +V F+ +T+ + LL+ C
Sbjct: 4 ERTGTLVTASAHIITAVIGSGVLSLAWAIAQLGWVIGPAVLVAFSVITWFCSSLLADC 61
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.136 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,223,711
Number of extensions: 112622
Number of successful extensions: 399
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 19
Length of query: 81
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 30
Effective length of database: 14,372,887
Effective search space: 431186610
Effective search space used: 431186610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)