Os02g0102200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transmembrane amino acid transporter protein.
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Os02g0102200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transmembrane amino acid transporter protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.53 | 0.478 | 13.4 | 0.432 | 1.34 | -3.83 | 0.586 | -4.16 | 0.211 | 16.5 | 0.8147 | 1430 | -- | -- |
| 113.34 | 0.496 | 13.4 | 0.0468 | 1.35 | -2.87 | 0.409 | -- | 0.25 | 16.3 | 0.8682 | 1416 | -- | -- |
| 104.07 | 0.475 | 13.4 | 0.408 | 1.32 | -3.84 | -- | -4.09 | 0.195 | 16.6 | 0.7334 | 1434 | -- | -- |
| 113.21 | 0.496 | 13.4 | 0.0231 | 1.33 | -2.91 | -- | -- | 0.203 | 16.3 | 0.9053 | 1416 | -- | -- |
| 153.95 | 0.578 | 13.3 | 0.551 | -- | -3.03 | -- | -3.22 | 0.394 | -- | 0.6453 | 1981 | -- | -- |
| 210.09 | 0.68 | 13.4 | 0.737 | 1.28 | -- | 0.215 | -- | 0.541 | 16.8 | -- | -- | -- | -- |
| 210.21 | 0.679 | 13.4 | 0.737 | 1.28 | -- | -- | -- | 0.542 | 16.8 | -- | -- | -- | -- |
| 138.19 | 0.548 | 13.4 | 0.359 | -- | -2.7 | -- | -- | 0.313 | -- | 1.02 | 2008 | -- | -- |
| 113.14 | 0.495 | 13.4 | -- | 1.31 | -2.91 | -- | -- | 0.204 | 16.5 | 0.8995 | 1423 | -- | -- |
| 297.09 | 0.805 | 13.4 | 0.689 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 224.54 | 0.701 | 13.4 | -- | 1.27 | -- | -- | -- | 0.46 | 16.8 | -- | -- | -- | -- |
| 129.9 | 0.531 | 13.4 | -- | -- | -2.95 | -- | -- | 0.162 | -- | 1.062 | 3442 | -- | -- |
| 309.63 | 0.821 | 13.4 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 5 | 103.00 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 7 | 103.24 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 8 | 103.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 13 | 103.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 15 | 104.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 20 | 104.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 23 | 104.43 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 31 | 104.58 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 39 | 104.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 41 | 104.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 64 | 105.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 71 | 105.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 22 |
| 74 | 105.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 81 | 105.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 86 | 105.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 89 | 105.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 91 | 105.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 96 | 105.27 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 101 | 105.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 171 | 105.66 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 172 | 105.68 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 181 | 105.78 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 186 | 105.83 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 280 | 106.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 316 | 107.17 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 376 | 107.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 404 | 107.96 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 408 | 107.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 409 | 107.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 419 | 108.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 422 | 108.07 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 438 | 108.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 446 | 108.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 466 | 108.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 476 | 108.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 481 | 108.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 482 | 108.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 491 | 108.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 524 | 108.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 576 | 109.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 585 | 109.27 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 601 | 109.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 606 | 109.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 608 | 109.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 610 | 109.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 611 | 109.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 616 | 109.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 637 | 109.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 639 | 109.43 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 651 | 109.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 679 | 109.63 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 700 | 109.69 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 723 | 109.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 763 | 109.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 776 | 109.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 788 | 109.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 797 | 110.00 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 809 | 110.06 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 810 | 110.06 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 881 | 110.36 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 998 | 110.79 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |