Os07g0134000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid permease-like protein (Fragment).
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Os07g0134000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid permease-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.91 | 0.387 | 12.8 | -0.428 | 0.843 | 1.39 | -0.113 | 2.27 | -0.285 | 2.46 | 6.973 | 604 | -- | -- |
| 71.35 | 0.393 | 12.8 | -0.726 | 0.936 | 1.24 | 0.00977 | -- | -0.372 | 2.27 | 17.7 | 537 | -- | -- |
| 67.9 | 0.384 | 12.8 | -0.426 | 0.868 | 1.39 | -- | 2.27 | -0.286 | 2.45 | 5.755 | 575 | -- | -- |
| 70 | 0.39 | 12.8 | -0.811 | 0.889 | 1.17 | -- | -- | -0.378 | 2.62 | 21.39 | 571 | -- | -- |
| 92.75 | 0.449 | 12.8 | -0.369 | -- | 1.61 | -- | 2.61 | -0.286 | -- | 4.903 | 972 | -- | -- |
| 95.75 | 0.459 | 12.8 | -0.465 | 0.83 | -- | 0.261 | -- | -0.171 | 0.626 | -- | -- | -- | -- |
| 96.02 | 0.459 | 12.8 | -0.476 | 0.83 | -- | -- | -- | -0.173 | 0.722 | -- | -- | -- | -- |
| 95.28 | 0.455 | 12.8 | -0.913 | -- | 1.63 | -- | -- | -0.43 | -- | 11.8 | 988 | -- | -- |
| 83.55 | 0.426 | 12.8 | -- | 0.915 | 0.956 | -- | -- | -0.252 | 2.33 | 22.17 | 528 | -- | -- |
| 139.16 | 0.551 | 12.8 | -0.446 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 101.99 | 0.472 | 12.8 | -- | 0.823 | -- | -- | -- | -0.12 | 0.695 | -- | -- | -- | -- |
| 107.57 | 0.483 | 12.8 | -- | -- | 1.05 | -- | -- | -0.221 | -- | 23.97 | 1029 | -- | -- |
| 144.4 | 0.561 | 12.8 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.65 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 3 | 60.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 65 | 64.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 90 | 65.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 93 | 65.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 123 | 66.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 130 | 66.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 133 | 66.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 188 | 67.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 189 | 67.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 258 | 68.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 285 | 68.29 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 302 | 68.35 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 320 | 68.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 321 | 68.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 16 |
| 379 | 68.60 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 382 | 68.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 385 | 68.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 398 | 68.70 | radiation | 1.0 | 270 | > th | dose independent | sin | 17 | NA |
| 410 | 68.73 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 456 | 68.90 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 458 | 68.91 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 475 | 68.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 542 | 69.22 | temperature | 10.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 589 | 69.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 660 | 69.63 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 665 | 69.64 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 714 | 69.78 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 716 | 69.78 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 718 | 69.79 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 730 | 69.83 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 792 | 70.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 802 | 70.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 15 |
| 804 | 70.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 850 | 70.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 878 | 70.35 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 889 | 70.39 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 957 | 70.60 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 15 |
| 960 | 70.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 16 |
| 997 | 70.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 1000 | 70.70 | wind | 9.0 | 90 | < th | dose independent | rect. | 15 | 15 |