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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0228800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid/polyamine transporter II family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0365) R2 : 0.461
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.51 (0.128) R2dC : 0.994 R2C : -0.224
β3 : -2.39 (0.149) R2dE : 0.678 R2E : -0.557
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.278 (0.0769) R2dN8 : 0.0195 R2N8 : -0.00403
σ : 0.682
deviance : 214.66
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_____
C
peak time of C : 11.7
E
wheather : temperature
threshold : 9.645
memory length : 221
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.92
open length of G : 8.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.41 0.683 3.34 0.131 2.54 -2.4 1.12 -1.07 0.291 11.9 9.651 241 2.97 8.13
211.86 0.678 3.34 0.211 2.42 -2.31 0.622 -- 0.303 12 11.61 220 3.01 8.17
213.16 0.68 3.34 0.23 2.51 -2.41 -- 0.238 0.293 11.8 10.02 218 2.93 8.3
213.28 0.68 3.34 0.219 2.5 -2.4 -- -- 0.293 11.8 9.977 221 2.92 8.28
351 0.873 3.32 0.572 -- -1.56 -- 0.533 0.521 -- -11.87 1528 2.8 7.75
258.41 0.754 3.42 0.0418 1.54 -- 1 -- 0.165 15.2 -- -- -- --
261.66 0.758 3.42 0.0621 1.54 -- -- -- 0.171 15.1 -- -- -- --
344.69 0.865 3.37 0.315 -- -1.33 -- -- 0.341 -- -120.7 1476 3.12 7.68
214.66 0.682 3.34 -- 2.51 -2.39 -- -- 0.278 11.7 9.645 221 2.92 8.28
396.52 0.93 3.42 -0.00335 -- -- -- -- 0.131 -- -- -- -- --
261.76 0.757 3.42 -- 1.54 -- -- -- 0.164 15.1 -- -- -- --
346.01 0.866 3.39 -- -- -1.19 -- -- 0.268 -- -120.6 1486 3.12 7.62
396.52 0.929 3.42 -- -- -- -- -- 0.131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.76 temperature 10.0 270 > th dose dependent rect. 3 8
6 218.18 temperature 10.0 270 > th dose dependent rect. 3 19
9 219.53 temperature 10.0 90 > th dose dependent rect. 3 22
12 220.82 temperature 30.0 90 < th dose dependent rect. 23 18
27 222.36 radiation 30.0 4320 < th dose independent rect. 23 8
34 223.14 temperature 15.0 270 > th dose independent rect. 3 8
40 223.28 temperature 15.0 270 > th dose independent rect. 15 7
45 223.57 temperature 30.0 10 < th dose dependent rect. 24 17
46 223.58 radiation 30.0 270 < th dose independent rect. 15 7
52 223.72 temperature 15.0 270 > th dose independent rect. 4 17
55 223.79 temperature 20.0 10 > th dose dependent rect. 5 7
58 223.86 temperature 20.0 270 > th dose independent rect. 9 8
60 223.88 temperature 15.0 270 > th dose independent rect. 3 19
68 223.99 radiation 40.0 270 < th dose dependent rect. 14 8
87 224.36 radiation 10.0 4320 < th dose dependent rect. 23 6
88 224.38 temperature 25.0 30 < th dose independent rect. 22 18
104 224.83 temperature 25.0 30 > th dose independent rect. 18 18
110 225.04 radiation 1.0 270 < th dose dependent rect. 21 17
114 225.09 atmosphere 1015.0 270 < th dose independent rect. 15 7
115 225.09 temperature 10.0 270 > th dose independent rect. 22 17
130 225.30 humidity 70.0 1440 > th dose independent rect. 23 8
137 225.41 temperature 15.0 10 > th dose dependent rect. 6 16
140 225.46 wind 7.0 270 < th dose independent rect. 3 8
147 225.54 temperature 30.0 10 < th dose dependent rect. 22 19
152 225.68 temperature 25.0 10 > th dose dependent rect. 20 16
153 225.71 wind 9.0 270 < th dose independent rect. 15 7
157 225.78 atmosphere 995.0 270 > th dose independent rect. 22 17
170 225.97 radiation 1.0 270 < th dose independent rect. 21 17
175 226.05 temperature 15.0 270 > th dose independent rect. 16 17
176 226.09 wind 9.0 270 < th dose independent rect. 22 17
180 226.13 precipitation 0.1 270 < th dose independent rect. 15 7
182 226.13 precipitation 0.1 270 < th dose dependent rect. 15 7
193 226.25 humidity 50.0 270 > th dose independent rect. 3 8
195 226.29 radiation 10.0 4320 < th dose independent rect. 23 6
207 226.36 precipitation 0.1 270 < th dose independent rect. 22 17
208 226.36 precipitation 0.1 270 < th dose dependent rect. 22 17
231 226.66 temperature 30.0 10 < th dose dependent rect. 9 9
233 226.72 wind 1.0 270 > th dose independent rect. 15 7
272 227.09 radiation 40.0 270 < th dose independent rect. 16 17
282 227.18 wind 9.0 270 < th dose independent rect. 11 16
288 227.23 precipitation 0.1 270 < th dose independent rect. 3 8
289 227.23 precipitation 0.1 270 < th dose dependent rect. 3 8
295 227.28 atmosphere 995.0 270 > th dose independent rect. 3 8
296 227.28 atmosphere 1015.0 270 < th dose independent rect. 3 8
297 227.28 temperature 10.0 270 > th dose independent rect. 11 16
320 227.59 humidity 50.0 270 > th dose independent rect. 16 17
325 227.60 radiation 1.0 270 > th dose independent rect. 9 8
329 227.64 temperature 25.0 10 > th dose dependent rect. 18 18
357 227.99 temperature 10.0 270 > th dose independent rect. 9 7
358 227.99 atmosphere 1015.0 270 < th dose independent rect. 9 7
372 228.12 temperature 10.0 270 > th dose dependent rect. 15 20
374 228.14 atmosphere 995.0 270 > th dose independent rect. 15 7
389 228.31 wind 9.0 270 < th dose independent rect. 16 17
404 228.41 precipitation 0.1 270 < th dose independent rect. 9 7
406 228.41 precipitation 0.1 270 < th dose dependent rect. 9 7
426 228.61 wind 9.0 270 < th dose independent rect. 9 7
453 228.79 temperature 15.0 270 > th dose independent rect. 15 20
461 228.85 humidity 50.0 270 > th dose independent rect. 15 7
466 228.87 humidity 50.0 270 > th dose independent rect. 16 5
478 228.97 precipitation 0.1 270 < th dose independent rect. 11 16
480 228.97 precipitation 0.1 270 < th dose dependent rect. 11 16
487 228.98 temperature 25.0 10 > th dose dependent sin 8 NA
495 229.02 precipitation 0.1 270 < th dose independent rect. 16 17
496 229.02 precipitation 0.1 270 < th dose dependent rect. 16 17
511 229.13 temperature 15.0 90 > th dose dependent rect. 18 18
512 229.14 atmosphere 1015.0 270 < th dose independent rect. 22 17
523 229.19 temperature 15.0 90 > th dose independent rect. 3 22
558 229.40 temperature 30.0 10 < th dose dependent sin 4 NA
561 229.41 humidity 50.0 270 > th dose independent rect. 22 17
577 229.53 temperature 25.0 10 > th dose dependent rect. 24 12
586 229.59 atmosphere 995.0 270 > th dose dependent rect. 9 7
591 229.62 atmosphere 1005.0 270 > th dose dependent rect. 11 3
596 229.67 wind 9.0 270 < th dose dependent rect. 3 8
615 229.73 humidity 90.0 270 < th dose independent rect. 10 6
621 229.75 temperature 25.0 30 > th dose independent rect. 5 7
653 229.93 atmosphere 995.0 270 > th dose independent rect. 9 7
690 230.12 atmosphere 995.0 270 > th dose independent rect. 16 17
691 230.14 temperature 25.0 720 < th dose dependent rect. 4 11
698 230.19 atmosphere 995.0 270 > th dose dependent rect. 22 18
711 230.26 temperature 25.0 30 < th dose independent sin 5 NA
713 230.27 wind 9.0 270 < th dose dependent rect. 15 7
722 230.30 atmosphere 1015.0 270 < th dose independent rect. 4 17
766 230.57 temperature 10.0 43200 > th dose independent rect. 12 8
778 230.61 wind 9.0 270 < th dose dependent rect. 16 5
800 230.71 atmosphere 1015.0 270 < th dose independent rect. 17 16
832 230.86 radiation 10.0 4320 < th dose dependent rect. 2 3
890 231.13 humidity 70.0 10 > th dose dependent rect. 22 16
892 231.16 temperature 25.0 720 < th dose dependent sin 3 NA
899 231.19 precipitation 0.1 270 < th dose independent rect. 4 17
901 231.19 precipitation 0.1 270 < th dose dependent rect. 4 17
910 231.24 temperature 10.0 270 > th dose independent rect. 21 7
911 231.24 temperature 30.0 270 < th dose independent rect. 21 7
912 231.24 humidity 50.0 270 > th dose independent rect. 21 7
915 231.24 atmosphere 995.0 270 > th dose independent rect. 21 7
916 231.24 radiation 1.0 270 < th dose independent rect. 21 7
922 231.24 radiation 1.0 270 < th dose dependent rect. 21 7
929 231.25 wind 9.0 270 < th dose independent rect. 21 7
936 231.26 humidity 70.0 10 > th dose dependent rect. 22 18
990 231.50 wind 9.0 270 < th dose independent rect. 4 17