Os04g0490900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os04g0490900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 301.12 | 0.815 | 3.67 | 0.549 | 0.835 | 2.25 | -0.588 | 1.53 | 0.172 | 6.61 | 30.33 | 135 | 22.4 | -- |
| 301.74 | 0.809 | 3.67 | 0.649 | 0.775 | 2.17 | 0.337 | -- | 0.178 | 6.55 | 30.8 | 165 | 22.9 | -- |
| 301.05 | 0.808 | 3.66 | 0.516 | 0.752 | 2.3 | -- | 1.29 | 0.161 | 6.45 | 30.6 | 167 | 22.8 | -- |
| 301.81 | 0.809 | 3.65 | 0.696 | 0.8 | 2.09 | -- | -- | 0.21 | 6.71 | 30.6 | 167 | 23.1 | -- |
| 301.76 | 0.809 | 3.66 | 0.707 | -- | 2.8 | -- | 0.941 | 0.207 | -- | 34.33 | 169 | 23.7 | -- |
| 341.59 | 0.866 | 3.68 | 0.35 | 1.9 | -- | 0.143 | -- | -0.0523 | 6.94 | -- | -- | -- | -- |
| 341.64 | 0.866 | 3.68 | 0.353 | 1.9 | -- | -- | -- | -0.0527 | 6.94 | -- | -- | -- | -- |
| 302.08 | 0.809 | 3.67 | 0.686 | -- | 2.82 | -- | -- | 0.207 | -- | 34.11 | 173 | 23.7 | -- |
| 313.13 | 0.824 | 3.68 | -- | 0.826 | 1.86 | -- | -- | 0.11 | 6.89 | 30.99 | 168 | 23.4 | -- |
| 532.15 | 1.08 | 3.72 | 0.393 | -- | -- | -- | -- | -0.017 | -- | -- | -- | -- | -- |
| 344.93 | 0.869 | 3.69 | -- | 1.91 | -- | -- | -- | -0.092 | 6.93 | -- | -- | -- | -- |
| 313.86 | 0.825 | 3.69 | -- | -- | 2.71 | -- | -- | 0.106 | -- | 36.3 | 167 | 23.8 | -- |
| 536.22 | 1.08 | 3.73 | -- | -- | -- | -- | -- | -0.0606 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.16 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 294.27 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 16 |
| 11 | 295.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 42 | 299.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 80 | 301.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 91 | 302.48 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 107 | 303.02 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 109 | 303.13 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 114 | 303.42 | temperature | 15.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 119 | 303.52 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 129 | 304.11 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 144 | 304.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 148 | 304.94 | temperature | 15.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 150 | 304.98 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 7 |
| 167 | 305.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 189 | 305.82 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 231 | 306.68 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 302 | 307.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 318 | 307.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 333 | 308.17 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 339 | 308.21 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 342 | 308.24 | wind | 1.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 348 | 308.27 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 360 | 308.47 | wind | 9.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 364 | 308.47 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 366 | 308.47 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 367 | 308.47 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 368 | 308.47 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 384 | 308.61 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 415 | 309.09 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 449 | 309.50 | temperature | 25.0 | 90 | < th | dose independent | rect. | 5 | 7 |
| 458 | 309.58 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 488 | 310.01 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 527 | 310.45 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 530 | 310.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 553 | 310.76 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 570 | 310.87 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 588 | 310.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 592 | 311.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 599 | 311.04 | radiation | 40.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 628 | 311.18 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 641 | 311.26 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 653 | 311.34 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 661 | 311.45 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 683 | 311.53 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 710 | 311.65 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 9 |
| 725 | 311.76 | humidity | 90.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 731 | 311.79 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 18 |
| 740 | 311.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 20 |
| 743 | 311.86 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 16 |
| 747 | 311.89 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 749 | 311.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 752 | 311.92 | humidity | 90.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 791 | 312.11 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 21 |
| 806 | 312.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 16 |
| 826 | 312.23 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 833 | 312.26 | wind | 9.0 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 862 | 312.37 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 865 | 312.37 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 21 |
| 868 | 312.37 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 875 | 312.40 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 898 | 312.45 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 924 | 312.56 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 16 | NA |
| 930 | 312.58 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 934 | 312.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 948 | 312.63 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 950 | 312.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 988 | 312.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |