Os12g0181500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid carrier (Fragment).
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Os12g0181500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid carrier (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75 | 0.407 | 12.5 | -0.572 | 0.681 | -0.601 | -0.27 | -0.305 | -0.852 | 6 | 14.1 | 9 | -- | -- |
| 75.04 | 0.407 | 12.5 | -0.575 | 0.663 | -0.606 | -0.186 | -- | -0.849 | 6.02 | 14.49 | 8 | -- | -- |
| 74.77 | 0.406 | 12.5 | -0.581 | 0.666 | -0.59 | -- | -0.258 | -0.849 | 6.12 | 14.13 | 8 | -- | -- |
| 75.11 | 0.406 | 12.5 | -0.576 | 0.664 | -0.592 | -- | -- | -0.848 | 6.13 | 14.49 | 8 | -- | -- |
| 96.63 | 0.46 | 12.6 | -0.544 | -- | -0.607 | -- | -0.275 | -0.842 | -- | 8.13 | 8 | -- | -- |
| 81.85 | 0.424 | 12.5 | -0.563 | 0.957 | -- | 0.156 | -- | -0.838 | 8.89 | -- | -- | -- | -- |
| 81.93 | 0.424 | 12.5 | -0.558 | 0.957 | -- | -- | -- | -0.839 | 8.87 | -- | -- | -- | -- |
| 97.1 | 0.461 | 12.6 | -0.541 | -- | -0.605 | -- | -- | -0.842 | -- | 7.88 | 6 | -- | -- |
| 83.85 | 0.429 | 12.5 | -- | 0.659 | -0.568 | -- | -- | -0.784 | 6.32 | 14.49 | 8 | -- | -- |
| 134.18 | 0.541 | 12.5 | -0.558 | -- | -- | -- | -- | -0.832 | -- | -- | -- | -- | -- |
| 90.14 | 0.444 | 12.5 | -- | 0.956 | -- | -- | -- | -0.776 | 8.91 | -- | -- | -- | -- |
| 104.8 | 0.478 | 12.5 | -- | -- | -0.61 | -- | -- | -0.781 | -- | 8.432 | 3 | -- | -- |
| 142.39 | 0.557 | 12.5 | -- | -- | -- | -- | -- | -0.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.82 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 3 | 72.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 4 | 72.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 8 | 73.19 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 10 | 73.23 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 13 | 73.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 15 |
| 14 | 73.33 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 28 | 73.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 29 | 73.64 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 10 |
| 33 | 73.70 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 34 | 73.73 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 36 | 73.76 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 38 | 73.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 17 |
| 40 | 73.86 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 55 | 74.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 21 |
| 56 | 74.06 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 57 | 74.09 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 61 | 74.10 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 69 | 74.21 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 19 |
| 80 | 74.34 | temperature | 30.0 | 720 | > th | dose independent | rect. | 8 | 7 |
| 84 | 74.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 10 |
| 96 | 74.36 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 15 |
| 114 | 74.48 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 121 | 74.51 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 126 | 74.57 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 10 |
| 129 | 74.59 | temperature | 30.0 | 720 | > th | dose independent | rect. | 11 | 4 |
| 130 | 74.60 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 1 |
| 131 | 74.60 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 137 | 74.64 | wind | 5.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 144 | 74.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 8 |
| 146 | 74.68 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 11 | 18 |
| 147 | 74.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 13 | 10 |
| 150 | 74.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 5 |
| 151 | 74.70 | temperature | 25.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 169 | 74.73 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 170 | 74.74 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 174 | 74.74 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 184 | 74.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 187 | 74.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 191 | 74.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 200 | 74.78 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 201 | 74.78 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 213 | 74.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 217 | 74.79 | radiation | 10.0 | 30 | < th | dose independent | rect. | 24 | 17 |
| 220 | 74.80 | wind | 9.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 239 | 74.83 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 10 |
| 240 | 74.83 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 10 |
| 242 | 74.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 244 | 74.85 | humidity | 60.0 | 720 | < th | dose independent | rect. | 13 | 2 |
| 247 | 74.86 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 3 |
| 248 | 74.86 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 254 | 74.89 | temperature | 30.0 | 720 | > th | dose independent | sin | 5 | NA |
| 263 | 74.91 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 19 |
| 267 | 74.92 | humidity | 60.0 | 720 | < th | dose independent | rect. | 12 | 4 |
| 269 | 74.92 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 270 | 74.93 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 271 | 74.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 282 | 74.95 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 16 | 7 |
| 295 | 74.98 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 298 | 74.98 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 303 | 74.99 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 314 | 75.02 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 22 |
| 315 | 75.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 335 | 75.10 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 338 | 75.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 342 | 75.11 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 374 | 75.19 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 386 | 75.22 | humidity | 70.0 | 10 | > th | dose independent | rect. | 10 | 19 |
| 396 | 75.24 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 9 |
| 410 | 75.28 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 416 | 75.30 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 432 | 75.33 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 443 | 75.35 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 444 | 75.36 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 24 | 4 |
| 475 | 75.40 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 487 | 75.43 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 13 | 15 |
| 504 | 75.48 | temperature | 25.0 | 10 | < th | dose independent | rect. | 1 | 9 |
| 508 | 75.48 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 518 | 75.49 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 543 | 75.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 548 | 75.55 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 562 | 75.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 23 |
| 564 | 75.57 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 570 | 75.57 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 579 | 75.58 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 581 | 75.59 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 24 | 4 |
| 600 | 75.62 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 602 | 75.62 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 605 | 75.63 | humidity | 60.0 | 720 | > th | dose independent | rect. | 24 | 17 |
| 617 | 75.65 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 12 |
| 625 | 75.65 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 628 | 75.66 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 15 |
| 634 | 75.66 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 642 | 75.67 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 655 | 75.69 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 656 | 75.70 | wind | 7.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 658 | 75.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 665 | 75.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 666 | 75.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 13 | 16 |
| 669 | 75.72 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 679 | 75.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 681 | 75.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 682 | 75.73 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 686 | 75.73 | radiation | 1.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 691 | 75.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 1 |
| 694 | 75.73 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 699 | 75.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 705 | 75.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 706 | 75.74 | wind | 9.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 714 | 75.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 725 | 75.76 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 10 |
| 735 | 75.78 | temperature | 25.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 751 | 75.80 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 770 | 75.82 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 771 | 75.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 15 |
| 781 | 75.83 | humidity | 70.0 | 10 | > th | dose independent | rect. | 10 | 9 |
| 783 | 75.83 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 13 | 15 |
| 796 | 75.84 | temperature | 25.0 | 10 | < th | dose independent | rect. | 1 | 4 |
| 801 | 75.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 812 | 75.85 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 820 | 75.86 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 834 | 75.86 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 21 |
| 840 | 75.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 842 | 75.87 | radiation | 10.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 848 | 75.88 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 850 | 75.88 | temperature | 25.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 852 | 75.88 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 853 | 75.88 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 888 | 75.91 | wind | 7.0 | 10 | < th | dose dependent | rect. | 24 | 5 |
| 933 | 75.94 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 938 | 75.94 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 943 | 75.95 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 979 | 75.98 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 20 | 16 |
| 988 | 75.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 24 | 5 |
| 994 | 75.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 24 | 5 |