Os01g0878700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os01g0878700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.11 | 0.835 | 7.1 | 2 | 2.08 | -2.27 | -0.0757 | -1.13 | 0.873 | 9.89 | 15.56 | 95 | 5.84 | 21.2 |
| 317.22 | 0.83 | 7.09 | 2.13 | 2.09 | -2.3 | -0.0796 | -- | 0.915 | 9.86 | 16.25 | 84 | 5.9 | 21.3 |
| 315.93 | 0.828 | 7.1 | 2.01 | 2.09 | -2.28 | -- | -1.05 | 0.875 | 9.87 | 16.03 | 89 | 5.85 | 21.3 |
| 317.23 | 0.83 | 7.08 | 2.14 | 2.11 | -2.29 | -- | -- | 0.929 | 9.83 | 16.38 | 84 | 5.87 | 21.4 |
| 373.29 | 0.9 | 7.25 | 2.74 | -- | -3.4 | -- | 1.1 | 0.904 | -- | -7.105 | 510 | 5.22 | 21.5 |
| 389.02 | 0.925 | 7.15 | 1.7 | 2.44 | -- | 0.4 | -- | 0.573 | 7.94 | -- | -- | -- | -- |
| 389.49 | 0.924 | 7.15 | 1.71 | 2.43 | -- | -- | -- | 0.573 | 7.95 | -- | -- | -- | -- |
| 349.06 | 0.87 | 7.17 | 2.09 | -- | -3.14 | -- | -- | 0.814 | -- | -16.28 | 548 | 5.29 | 20.4 |
| 429.18 | 0.965 | 7.16 | -- | 2.2 | -1.6 | -- | -- | 0.6 | 9.04 | 13.14 | 61 | 5.82 | 21.7 |
| 712.51 | 1.25 | 7.21 | 1.74 | -- | -- | -- | -- | 0.605 | -- | -- | -- | -- | -- |
| 466.96 | 1.01 | 7.19 | -- | 2.45 | -- | -- | -- | 0.382 | 7.9 | -- | -- | -- | -- |
| 454 | 0.992 | 7.22 | -- | -- | -2.69 | -- | -- | 0.583 | -- | 0.01524 | 405 | 10.3 | 12.7 |
| 792.34 | 1.31 | 7.26 | -- | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 317.62 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 320.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 6 | 322.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 36 | 329.08 | temperature | 20 | 30 | > th | dose independent | rect. | 21 | 7 |
| 66 | 332.34 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 67 | 332.39 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 87 | 334.23 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 112 | 335.21 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 144 | 336.66 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 158 | 337.44 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 179 | 337.86 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 201 | 338.46 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 207 | 338.63 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 215 | 338.72 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 221 | 338.81 | radiation | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 234 | 339.27 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 261 | 339.71 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 262 | 339.75 | radiation | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 271 | 339.92 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 279 | 340.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 285 | 340.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 294 | 340.27 | radiation | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 298 | 340.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 300 | 340.32 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 302 | 340.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 315 | 340.59 | humidity | 70 | 14400 | > th | dose dependent | rect. | 24 | 11 |
| 320 | 340.66 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 322 | 340.68 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 335 | 340.85 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 7 |
| 345 | 340.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 346 | 340.90 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 358 | 340.98 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 363 | 341.05 | humidity | 70 | 14400 | > th | dose dependent | sin | 7 | NA |
| 382 | 341.20 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 21 |
| 440 | 341.59 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 460 | 341.68 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 471 | 341.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 536 | 342.10 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 550 | 342.16 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 553 | 342.17 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 596 | 342.33 | humidity | 70 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 609 | 342.39 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |
| 612 | 342.39 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 623 | 342.44 | humidity | 90 | 4320 | > th | dose dependent | sin | 1 | NA |
| 635 | 342.48 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 650 | 342.55 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 7 |
| 691 | 342.64 | humidity | 70 | 14400 | > th | dose dependent | rect. | 24 | 18 |
| 717 | 342.75 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 743 | 342.85 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 749 | 342.87 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 758 | 342.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 772 | 342.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 775 | 342.96 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 783 | 342.98 | humidity | 80 | 14400 | < th | dose independent | no | NA | NA |
| 789 | 343.00 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 827 | 343.10 | radiation | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 876 | 343.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 882 | 343.19 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 886 | 343.20 | humidity | 80 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 898 | 343.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 923 | 343.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 937 | 343.30 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 951 | 343.34 | humidity | 80 | 14400 | > th | dose independent | no | NA | NA |
| 966 | 343.37 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 4 |
| 968 | 343.37 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 976 | 343.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 986 | 343.43 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 995 | 343.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |