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Os05g0424000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Amino acid carrier (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0574) R2 : 0.655
β1 : -6.36 (0.286) R2dD : 0.759 R2D : -0.45
β2 : 1.68 (0.141) R2dC : 0.114 R2C : 0.0741
β3 : 4.64 (0.23) R2dE : 0.336 R2E : 0.0947
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 24.3 (1.15) R2dD*E : 0.625 R2D*E : -0.277
γ1 : -0.274 (0.119) R2dN8 : 0.00614 R2N8 : -0.041
σ : 1.05
deviance : 503.45
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C
peak time of C : 8.5
E
wheather : radiation
threshold : 0.8967
memory length : 1442
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
504.51 1.06 10 -6.12 1.69 4.8 -0.557 24.2 -0.3 8.38 0.921 1442 18 11.1
795.85 1.31 10.2 -2.08 1.01 3.94 -0.952 -- 0.293 9.79 2.156 1433 17.5 12.3
503.45 1.05 10 -6.36 1.68 4.64 -- 24.3 -0.274 8.5 0.8967 1442 18 11.1
769.28 1.29 10.2 -1.75 1.61 3.92 -- -- 0.192 8.41 2.257 1439 17.5 12.3
637.03 1.18 10.1 -6.73 -- 4.62 -- 23.9 -0.358 -- 0.78 1437 18 11.2
1266.2 1.67 10.3 -1.38 1.53 -- -1.16 -- -0.102 8.81 -- -- -- --
1270.7 1.67 10.3 -1.42 1.53 -- -- -- -0.103 8.8 -- -- -- --
850.5 1.36 10.2 -1.81 -- 4.29 -- -- 0.171 -- 2.226 1418 17.5 12.3
542.04 1.08 9.9 -- 1.56 4.75 -- -- 1.58 8.08 1.168 47520 18.2 10.4
1403.76 1.75 10.3 -1.42 -- -- -- -- -0.0911 -- -- -- -- --
1323.86 1.7 10.2 -- 1.53 -- -- -- 0.0555 8.87 -- -- -- --
666.08 1.2 9.91 -- -- 4.87 -- -- 1.76 -- 0.9129 47520 18.2 10.1
1456.86 1.78 10.3 -- -- -- -- -- 0.0664 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 456.76 humidity 90 43200 < th dose independent rect. 10 1
2 464.21 temperature 25 14400 > th dose dependent rect. 16 1
4 465.18 humidity 90 43200 > th dose independent rect. 9 2
12 470.64 radiation 1 14400 < th dose independent rect. 18 10
15 470.84 radiation 1 14400 < th dose independent rect. 18 7
17 470.96 radiation 1 14400 < th dose independent rect. 18 2
19 471.15 radiation 1 14400 < th dose independent rect. 18 4
24 471.42 radiation 1 14400 > th dose independent rect. 18 1
35 471.58 humidity 80 43200 > th dose dependent rect. 10 2
40 472.87 humidity 80 43200 > th dose independent rect. 11 2
56 475.93 temperature 20 14400 > th dose dependent rect. 21 1
80 478.42 temperature 25 14400 < th dose independent rect. 18 1
94 479.38 temperature 25 14400 > th dose dependent sin 19 NA
113 480.35 temperature 25 14400 > th dose independent rect. 18 1
158 482.10 temperature 25 14400 > th dose dependent rect. 4 15
169 482.33 temperature 20 14400 > th dose dependent sin 14 NA
178 482.47 temperature 20 14400 > th dose dependent rect. 16 15
214 483.12 temperature 25 14400 < th dose independent rect. 17 20
217 483.23 temperature 25 14400 > th dose independent rect. 17 20
262 484.08 humidity 90 43200 < th dose independent rect. 17 1
332 485.27 humidity 90 43200 > th dose independent rect. 21 2
339 485.49 temperature 25 14400 > th dose independent rect. 4 8
412 486.72 temperature 25 14400 < th dose independent rect. 4 8
430 486.93 temperature 25 14400 > th dose independent rect. 17 4
479 487.78 temperature 25 14400 > th dose dependent no NA NA
487 487.87 temperature 25 14400 < th dose independent rect. 17 5
614 489.70 radiation 1 43200 < th dose dependent rect. 4 1
621 489.78 temperature 25 14400 < th dose independent rect. 10 22
624 489.80 radiation 1 43200 < th dose dependent rect. 2 3
637 489.93 temperature 25 14400 < th dose independent rect. 7 1
659 490.13 temperature 25 14400 < th dose independent rect. 23 14
671 490.29 temperature 25 14400 > th dose independent rect. 10 22
692 490.55 temperature 25 14400 < th dose independent no NA NA
695 490.58 temperature 25 14400 < th dose independent rect. 4 23
712 490.91 temperature 25 14400 > th dose independent rect. 16 8
713 490.93 temperature 25 14400 < th dose independent sin 5 NA
714 490.94 temperature 25 14400 > th dose independent rect. 23 14
719 490.96 temperature 25 14400 < th dose independent rect. 1 23
726 491.01 temperature 25 14400 < th dose independent sin 15 NA
728 491.03 temperature 25 14400 > th dose independent no NA NA
729 491.05 temperature 25 14400 < th dose independent rect. 16 9
735 491.14 temperature 25 14400 < th dose independent rect. 23 23
736 491.15 temperature 25 14400 > th dose independent rect. 4 23
749 491.27 temperature 25 14400 > th dose independent rect. 2 23
765 491.44 temperature 25 14400 > th dose independent sin 5 NA
766 491.46 temperature 25 14400 > th dose independent sin 15 NA
795 491.85 temperature 25 14400 > th dose independent rect. 23 23
811 491.97 temperature 25 14400 < th dose independent rect. 20 23
822 492.14 temperature 30 14400 < th dose independent rect. 14 2
856 492.60 temperature 25 14400 > th dose independent rect. 20 23
895 493.01 temperature 20 14400 > th dose dependent rect. 6 1