Os04g0470700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid transporter, transmembrane family protein.
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Os04g0470700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid transporter, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.63 | 0.324 | 12.6 | -0.304 | 1.29 | -0.91 | 1.22 | -1.16 | -0.271 | 0.8 | 24.28 | 71 | -- | -- |
| 49.57 | 0.33 | 12.6 | -0.459 | 1.28 | -0.764 | 0.875 | -- | -0.298 | 0.737 | 24.28 | 71 | -- | -- |
| 52.55 | 0.338 | 12.6 | -0.459 | 1.28 | -0.862 | -- | -0.333 | -0.293 | 0.789 | 23.87 | 70 | -- | -- |
| 52.58 | 0.338 | 12.6 | -0.49 | 1.26 | -0.791 | -- | -- | -0.301 | 0.741 | 24.2 | 65 | -- | -- |
| 121.41 | 0.513 | 12.6 | -0.503 | -- | -1.05 | -- | -0.982 | -0.384 | -- | 29.08 | 2421 | -- | -- |
| 58.04 | 0.357 | 12.5 | -0.283 | 1.14 | -- | 0.879 | -- | -0.167 | 0.71 | -- | -- | -- | -- |
| 61.32 | 0.367 | 12.5 | -0.316 | 1.14 | -- | -- | -- | -0.172 | 0.68 | -- | -- | -- | -- |
| 114.79 | 0.499 | 12.6 | -0.647 | -- | -1.31 | -- | -- | -0.368 | -- | 91.25 | 965 | -- | -- |
| 58.55 | 0.356 | 12.6 | -- | 1.23 | -0.596 | -- | -- | -0.224 | 0.678 | 24.2 | 54 | -- | -- |
| 142.96 | 0.559 | 12.5 | -0.275 | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
| 63.95 | 0.374 | 12.5 | -- | 1.14 | -- | -- | -- | -0.137 | 0.667 | -- | -- | -- | -- |
| 124.54 | 0.52 | 12.5 | -- | -- | -1.05 | -- | -- | -0.261 | -- | 103.2 | 956 | -- | -- |
| 144.95 | 0.562 | 12.5 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.08 | temperature | 10 | 90 | > th | dose dependent | sin | 11 | NA |
| 4 | 44.28 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 5 | 44.35 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 9 | 44.51 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 13 | 44.60 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 27 | 44.73 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 31 | 44.74 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 32 | 44.77 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 52 | 44.88 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 12 |
| 60 | 44.91 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 83 | 44.99 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 111 | 45.04 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 147 | 45.11 | temperature | 25 | 720 | < th | dose independent | sin | 14 | NA |
| 151 | 45.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 152 | 45.12 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 154 | 45.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 156 | 45.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 157 | 45.12 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 167 | 45.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 188 | 45.14 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 18 |
| 202 | 45.16 | temperature | 30 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 203 | 45.16 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 226 | 45.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 227 | 45.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 230 | 45.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 272 | 45.22 | temperature | 30 | 43200 | < th | dose independent | sin | 12 | NA |
| 305 | 45.22 | temperature | 30 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 322 | 45.23 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 19 |
| 323 | 45.24 | temperature | 30 | 43200 | > th | dose independent | sin | 12 | NA |
| 492 | 45.32 | temperature | 25 | 43200 | > th | dose dependent | sin | 12 | NA |
| 563 | 45.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 567 | 45.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 570 | 45.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 16 |
| 573 | 45.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 589 | 45.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 591 | 45.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 599 | 45.39 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 640 | 45.41 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 672 | 45.42 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 700 | 45.43 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 702 | 45.43 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 709 | 45.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 717 | 45.43 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 10 |